Evidence map›Paper›PMID 34031426›Full record

ArticleNature communications2021

Molecular landscape and subtype-specific therapeutic response of nasopharyngeal carcinoma revealed by integrative pharmacogenomics.

Ren-Bo Ding, Ping Chen, Barani Kumar Rajendran, Xueying Lyu, Haitao Wang, Jiaolin Bao, Jianming Zeng, Wenhui Hao, Heng Sun, Ada Hang-Heng Wong and 13 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 63 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
63citing papers in PubMed, 1 pooled it
14.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

63 citing papers in PubMed, 1 synthesis or guideline pooled it, 93 citations in OpenAlex.

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  9. Exploring the Mechanism ofCurrent computer-aided drug design · 2026
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3 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors at 3 institutions in 2 countries.

Ren-Bo Ding *Cancer Centre, Faculty of Health Sciences, University of Macau, Macau SAR, China.
Ping Chen *Cancer Centre, Faculty of Health Sciences, University of Macau, Macau SAR, China.
Barani Kumar Rajendran *Cancer Centre, Faculty of Health Sciences, University of Macau, Macau SAR, China.
Xueying Lyu *Cancer Centre, Faculty of Health Sciences, University of Macau, Macau SAR, China.
Haitao WangCancer Centre, Faculty of Health Sciences, University of Macau, Macau SAR, China.
Jiaolin BaoCancer Centre, Faculty of Health Sciences, University of Macau, Macau SAR, China.
Jianming ZengCancer Centre, Faculty of Health Sciences, University of Macau, Macau SAR, China.
Wenhui HaoCancer Centre, Faculty of Health Sciences, University of Macau, Macau SAR, China.
Heng SunCancer Centre, Faculty of Health Sciences, University of Macau, Macau SAR, China.
Ada Hang-Heng WongCancer Centre, Faculty of Health Sciences, University of Macau, Macau SAR, China.ORCID http://orcid.org/0000-0002-5960-9940
Monica Vishnu ValechaCancer Centre, Faculty of Health Sciences, University of Macau, Macau SAR, China.
Eun Ju YangCancer Centre, Faculty of Health Sciences, University of Macau, Macau SAR, China.
Sek Man SuCancer Centre, Faculty of Health Sciences, University of Macau, Macau SAR, China.
Tak Kan ChoiCancer Centre, Faculty of Health Sciences, University of Macau, Macau SAR, China.
Shuiming LiuKiang Wu Hospital, Macau SAR, China.
Kin Iong ChanKiang Wu Hospital, Macau SAR, China.
Ling-Lin YangDepartment of Oncology, The Affiliated Hospital of Southwest Medical University, Luzhou, Sichuan, China.
Jingbo WuDepartment of Oncology, The Affiliated Hospital of Southwest Medical University, Luzhou, Sichuan, China.
Kai MiaoCancer Centre, Faculty of Health Sciences, University of Macau, Macau SAR, China.ORCID http://orcid.org/0000-0003-4832-3354
Qiang ChenCancer Centre, Faculty of Health Sciences, University of Macau, Macau SAR, China.
Joong Sup ShimCancer Centre, Faculty of Health Sciences, University of Macau, Macau SAR, China.ORCID http://orcid.org/0000-0003-0167-7307
Xiaoling XuCancer Centre, Faculty of Health Sciences, University of Macau, Macau SAR, China.ORCID http://orcid.org/0000-0002-0852-0225
Chu-Xia DengCancer Centre, Faculty of Health Sciences, University of Macau, Macau SAR, China. cxdeng@um.edu.mo.ORCID http://orcid.org/0000-0001-8033-3902
University of Macau · MOAffiliated Hospital of Southwest Medical University · CNKiang Wu Hospital · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Nasopharyngeal carcinoma (NPC) is a malignant head and neck cancer type with high morbidity in Southeast Asia, however the pathogenic mechanism of this disease is poorly understood. Using integrative pharmacogenomics, we find that NPC subtypes maintain distinct molecular features, drug responsiveness, and graded radiation sensitivity. The epithelial carcinoma (EC) subtype is characterized by activations of microtubule polymerization and defective mitotic spindle checkpoint related genes, whereas sarcomatoid carcinoma (SC) and mixed sarcomatoid-epithelial carcinoma (MSEC) subtypes exhibit enriched epithelial-mesenchymal transition (EMT) and invasion promoting genes, which are well correlated with their morphological features. Furthermore, patient-derived organoid (PDO)-based drug test identifies potential subtype-specific treatment regimens, in that SC and MSEC subtypes are sensitive to microtubule inhibitors, whereas EC subtype is more responsive to EGFR inhibitors, which is synergistically enhanced by combining with radiotherapy. Through combinational chemoradiotherapy (CRT) screening, effective CRT regimens are also suggested for patients showing less sensitivity to radiation. Altogether, our study provides an example of applying integrative pharmacogenomics to establish a personalized precision oncology for NPC subtype-guided therapies.

Indexed as

Drug Evaluation, PreclinicalEpithelial-Mesenchymal TransitionExome SequencingGene Expression ProfilingGene Expression Regulation, NeoplasticGene Knockout TechniquesHumansMiddle AgedNasopharyngeal CarcinomaNasopharyngeal NeoplasmsPharmacogeneticsPrecision MedicineTranscriptome

Identifiers

PMID34031426
PMCPMC8144567
OpenAlexW3164926090

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.