Evidence map›Paper›PMID 34033651›Full record

ArticlePLoS genetics2021

Variation in phenotypes from a Bmp-Gata3 genetic pathway is modulated by Shh signaling.

Mary E Swartz, C Ben Lovely, Johann K Eberhart

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed, 1 pooled it
1.7field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 1 synthesis or guideline pooled it, 13 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. The extended analogy of extraembryonic development in insects and amniotes.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2022
    Review
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Mary E SwartzDepartment of Molecular Biosciences, University of Texas at Austin, Austin, Texas, United States of America.ORCID 0000-0002-7601-0147
C Ben LovelyDepartment of Molecular Biosciences, University of Texas at Austin, Austin, Texas, United States of America.ORCID 0000-0002-7838-5823
Johann K EberhartDepartment of Molecular Biosciences, University of Texas at Austin, Austin, Texas, United States of America.ORCID 0000-0001-5258-2477
The University of Texas at Austin · US

Funding

Mechanisms underlying the multifaceted basis of craniofacial dysmorphogenesisR35DE029086 · NIDCR · UNIVERSITY OF TEXAS AT AUSTIN · PI JOHANN K EBERHART · 2019 to 2026
$7.6M
Causes of Variability in Craniofacial DiseaseR01DE020884 · NIDCR · UNIVERSITY OF TEXAS AT AUSTIN · PI EBERHART, JOHANN K · 2010 to 2019
$3.4M
Analysis of an ethanol-sensitive pathway regulating anterior craniofacial developmentK99AA023560 · NIAAA · UNIVERSITY OF TEXAS AT AUSTIN · PI LOVELY, CHARLES BENJAMIN · 2015 to 2016
$190k
Ethanol-induced Lower Jaw Loss in Bmp Signaling Pathway MutantsF32AA021320 · NIAAA · UNIVERSITY OF TEXAS AT AUSTIN · PI LOVELY, CHARLES BENJAMIN · 2012 to 2014
$163k
NIAAA NIH HHS F32 AA021320NIAAA NIH HHS K99 AA023560NIDCR NIH HHS R01 DE020884NIDCR NIH HHS R35 DE029086
6 · The paper itself

Abstract

We sought to understand how perturbation of signaling pathways and their targets generates variable phenotypes. In humans, GATA3 associates with highly variable defects, such as HDR syndrome, microsomia and choanal atresia. We previously characterized a zebrafish point mutation in gata3 with highly variable craniofacial defects to the posterior palate. This variability could be due to residual Gata3 function, however, we observe the same phenotypic variability in gata3 null mutants. Using hsp:GATA3-GFP transgenics, we demonstrate that Gata3 function is required between 24 and 30 hpf. At this time maxillary neural crest cells fated to generate the palate express gata3. Transplantation experiments show that neural crest cells require Gata3 function for palatal development. Via a candidate approach, we determined if Bmp signaling was upstream of gata3 and if this pathway explained the mutant's phenotypic variation. Using BRE:d2EGFP transgenics, we demonstrate that maxillary neural crest cells are Bmp responsive by 24 hpf. We find that gata3 expression in maxillary neural crest requires Bmp signaling and that blocking Bmp signaling, in hsp:DN-Bmpr1a-GFP embryos, can phenocopy gata3 mutants. Palatal defects are rescued in hsp:DN-Bmpr1a-GFP;hsp:GATA3-GFP double transgenic embryos, collectively demonstrating that gata3 is downstream of Bmp signaling. However, Bmp attenuation does not alter phenotypic variability in gata3 loss-of-function embryos, implicating a different pathway. Due to phenotypes observed in hypomorphic shha mutants, the Sonic Hedgehog (Shh) pathway was a promising candidate for this pathway. Small molecule activators and inhibitors of the Shh pathway lessen and exacerbate, respectively, the phenotypic severity of gata3 mutants. Importantly, inhibition of Shh can cause gata3 haploinsufficiency, as observed in humans. We find that gata3 mutants in a less expressive genetic background have a compensatory upregulation of Shh signaling. These results demonstrate that the level of Shh signaling can modulate the phenotypes observed in gata3 mutants.

Indexed as

PhenotypeSignal TransductionAnimalsBone Morphogenetic ProteinsEmbryo, NonmammalianGATA3 Transcription FactorHaploinsufficiencyHedgehog ProteinsLoss of Function MutationMutationNeural CrestOrganogenesisSkullZebrafishZebrafish ProteinsBone Morphogenetic Proteinsgata3 protein, zebrafishGATA3 Transcription FactorHedgehog ProteinsShha protein, zebrafishZebrafish Proteins

Identifiers

PMID34033651
PMCPMC8184005
OpenAlexW3165830022

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.