Evidence map›Paper›PMID 34036224›Full record

ArticleJCO precision oncology2021

Integrating Clinical and Polygenic Factors to Predict Breast Cancer Risk in Women Undergoing Genetic Testing.

Elisha Hughes, Placede Tshiaba, Susanne Wagner, Thaddeus Judkins, Eric Rosenthal, Benjamin Roa, Shannon Gallagher, Stephanie Meek, Kathryn Dalton, Wade Hedegard and 10 more

Abstract read
In one paragraph

Article in JCO precision oncology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed, 2 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 2 syntheses or guidelines pooled it.

  1. Pooled it
  2. Pooled it
  3. Primary care physician use of patient race and polygenic risk scores in medical decision-making.Genetics in medicine : official journal of the American College of Medical Genetics · 2023
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  5. Development of a Breast Cancer Risk Prediction Model Integrating Monogenic, Polygenic, and Epidemiologic Risk.Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors.

Elisha HughesMyriad Genetics, Inc., Salt Lake City, UT.
Placede TshiabaMyriad Genetics, Inc., Salt Lake City, UT.
Susanne WagnerMyriad Genetics, Inc., Salt Lake City, UT.
Thaddeus JudkinsMyriad Genetics, Inc., Salt Lake City, UT.
Eric RosenthalMyriad Genetics, Inc., Salt Lake City, UT.
Benjamin RoaMyriad Genetics, Inc., Salt Lake City, UT.
Shannon GallagherMyriad Genetics, Inc., Salt Lake City, UT.
Stephanie MeekMyriad Genetics, Inc., Salt Lake City, UT.
Kathryn DaltonCape Cod Healthcare, Mashpee, MA.
Wade HedegardElizabeth Wende Breast Care, Rochester, NY.
Carol A AdamiBethesda Health, Boynton Beach, FL.
Danna F GrearThe Breast Center of NWA-Medical Associates of Northwest Arkansas, Fayetteville, AR.
Susan M DomchekBasser Center for BRCA, University of Pennsylvania, Philadelphia, PA.
Judy GarberDana-Farber Cancer Institute, Boston, MA.
Johnathan M LancasterMyriad Genetics, Inc., Salt Lake City, UT.
Jeffrey N WeitzelCity of Hope, Duarte, CA.
Allison W KurianStanford University School of Medicine, Stanford, CA.
Jerry S LanchburyMyriad Genetics, Inc., Salt Lake City, UT.
Alexander GutinMyriad Genetics, Inc., Salt Lake City, UT.
Mark E RobsonMemorial Sloan Kettering Cancer Center, New York, NY.

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI SELWYN M VICKERS · 1985 to 2026
$347.4M
NCI NIH HHS P30 CA008748
6 · The paper itself

Abstract

purposeScreening and prevention decisions for women at increased risk of developing breast cancer depend on genetic and clinical factors to estimate risk and select appropriate interventions. Integration of polygenic risk into clinical breast cancer risk estimators can improve discrimination. However, correlated genetic effects must be incorporated carefully to avoid overestimation of risk. MATERIALS AND

methodsA novel Fixed-Stratified method was developed that accounts for confounding when adding a new factor to an established risk model. A combined risk score (CRS) of an 86-single-nucleotide polymorphism polygenic risk score and the Tyrer-Cuzick v7.02 clinical risk estimator was generated with attenuation for confounding by family history. Calibration and discriminatory accuracy of the CRS were evaluated in two independent validation cohorts of women of European ancestry (N = 1,615 and N = 518). Discrimination for remaining lifetime risk was examined by age-adjusted logistic regression. Risk stratification with a 20% risk threshold was compared between CRS and Tyrer-Cuzick in an independent clinical cohort (N = 32,576).

resultsSimulation studies confirmed that the Fixed-Stratified method produced accurate risk estimation across patients with different family history. In both validation studies, CRS and Tyrer-Cuzick were significantly associated with breast cancer. In an analysis with both CRS and Tyrer-Cuzick as predictors of breast cancer, CRS added significant discrimination independent of that captured by Tyrer-Cuzick (

conclusionIntegrating clinical and polygenic factors into a risk model offers more effective risk stratification and supports a personalized genomic approach to breast cancer screening and prevention.

Indexed as

Genetic TestingMultifactorial InheritanceAdolescentAdultAgedAged, 80 and overBreast NeoplasmsFemaleHumansMiddle AgedPrognosisProspective StudiesRisk AssessmentYoung Adult

Identifiers

PMID34036224
PMCPMC8140787

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.