Evidence mapPaperPMID 34040544Full record

ArticleFrontiers in physiology2021

Transcriptome Analysis Reveals the Profile of Long Non-coding RNAs During Chicken Muscle Development.

Jie Liu, Yan Zhou, Xin Hu, Jingchao Yang, Qiuxia Lei, Wei Liu, Haixia Han, Fuwei Li, Dingguo Cao

Open access · goldAbstract read
In one paragraph

Article in Frontiers in physiology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.5field-weighted citation impact, top 44% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 9 citations in OpenAlex.

  1. Review
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  6. Carotenoids in Health as Studied by Omics-Related Endpoints.Advances in nutrition (Bethesda, Md.) · 2023
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Jie LiuPoultry Institute, Shandong Academy of Agricultural Sciences, Jinan, China.
Yan ZhouPoultry Institute, Shandong Academy of Agricultural Sciences, Jinan, China.
Xin HuMolecular and Cellular Biology, Gembloux Agro-Bio Tech, University of Liège, Gembloux, Belgium.
Jingchao YangShandong Animal Husbandry General Station, Jinan, China.
Qiuxia LeiPoultry Institute, Shandong Academy of Agricultural Sciences, Jinan, China.
Wei LiuPoultry Institute, Shandong Academy of Agricultural Sciences, Jinan, China.
Haixia HanPoultry Institute, Shandong Academy of Agricultural Sciences, Jinan, China.
Fuwei LiPoultry Institute, Shandong Academy of Agricultural Sciences, Jinan, China.
Dingguo CaoPoultry Institute, Shandong Academy of Agricultural Sciences, Jinan, China.
Shandong Academy of Agricultural Sciences · CNShandong Province Animal Husbandry and Veterinary Bureau · CNUniversity of Liège · BE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The developmental complexity of muscle arises from elaborate gene regulation. Long non-coding RNAs (lncRNAs) play critical roles in muscle development through the regulation of transcription and post-transcriptional gene expression. In chickens, previous studies have focused on the lncRNA profile during the embryonic periods, but there are no studies that explore the profile from the embryonic to post-hatching period. Here, we reconstructed 14,793 lncRNA transcripts and identified 2,858 differentially expressed lncRNA transcripts and 4,282 mRNAs from 12-day embryos (E12), 17-day embryos (E17), 1-day post-hatch chicks (D1), 14-day post-hatch chicks (D14), 56-day post-hatch chicks (D56), and 98-day post-hatch chicks (D98), based on our published RNA-seq datasets. We performed co-expression analysis for the differentially expressed lncRNAs and mRNAs, using STEM, and identified two profiles with opposite expression trends: profile 4 with a downregulated pattern and profile 21 with an upregulated pattern. The

Indexed as

breast musclechickenco-expressiondevelopmentlncRNA

Identifiers

PMID34040544
PMCPMC8141850
OpenAlexW3161748050

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.