Evidence map›Paper›PMID 34075639›Full record

ArticleProtein science : a publication of the Protein Society2021

Identification of amyloidogenic proteins in the microbiomes of a rat Parkinson's disease model and wild-type rats.

Line Friis Bakmann Christensen, Saeid Hadi Alijanvand, Michał Burdukiewicz, Florian-Alexander Herbst, Henrik Kjeldal, Morten Simonsen Dueholm, Daniel E Otzen

Open access · bronzeAbstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.8field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 12 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Trans-seeding of Alzheimer-related tau protein by a yeast prion.Alzheimer's & dementia : the journal of the Alzheimer's Association · 2022
    Article
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 4 countries.

Line Friis Bakmann ChristensenInterdisciplinary Nanoscience Center (iNANO), Department of Molecular Biology and Genetics, Aarhus University, Aarhus, Denmark.
Saeid Hadi AlijanvandInterdisciplinary Nanoscience Center (iNANO), Department of Molecular Biology and Genetics, Aarhus University, Aarhus, Denmark.
Michał BurdukiewiczInstitute of Biochemistry and Biophysics, Polish Academy of Sciences, Warsaw, Poland.
Florian-Alexander HerbstCenter for Microbial Communities, Department of Chemistry and Bioscience, Aalborg University, Aalborg, Denmark.
Henrik KjeldalCenter for Microbial Communities, Department of Chemistry and Bioscience, Aalborg University, Aalborg, Denmark.
Morten Simonsen DueholmCenter for Microbial Communities, Department of Chemistry and Bioscience, Aalborg University, Aalborg, Denmark.
Daniel E OtzenInterdisciplinary Nanoscience Center (iNANO), Department of Molecular Biology and Genetics, Aarhus University, Aarhus, Denmark.ORCID 0000-0002-2918-8989
Aalborg University · DKAarhus University · DKMedical University of Białystok · PL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cross seeding between amyloidogenic proteins in the gut is receiving increasing attention as a possible mechanism for initiation or acceleration of amyloid formation by aggregation-prone proteins such as αSN, which is central in the development of Parkinson's disease (PD). This is particularly pertinent in view of the growing number of functional (i.e., benign and useful) amyloid proteins discovered in bacteria. Here we identify two amyloidogenic proteins, Pr12 and Pr17, in fecal matter from PD transgenic rats and their wild type counterparts, based on their stability against dissolution by formic acid (FA). Both proteins show robust aggregation into ThT-positive aggregates that contain higher-order β-sheets and have a fibrillar morphology, indicative of amyloid proteins. In addition, Pr17 aggregates formed in vitro showed significant resistance against FA, suggesting an ability to form highly stable amyloid. Treatment with proteinase K revealed a protected core of approx. 9 kDa. Neither Pr12 nor Pr17, however, affected αSN aggregation in vitro. Thus, amyloidogenicity does not per se lead to an ability to cross-seed fibrillation of αSN. Our results support the use of proteomics and FA to identify amyloidogenic protein in complex mixtures and suggests that there may be numerous functional amyloid proteins in microbiomes.

Indexed as

alpha-SynucleinAmino Acid SequenceAmyloidAmyloidogenic ProteinsAnimalsBacterial ProteinsBenzothiazolesBiofilmsDisease Models, AnimalEndopeptidase KFecesFemaleFormatesGastrointestinal MicrobiomeHumansHydrogen-Ion Concentrationalpha-SynucleinAmyloidAmyloidogenic ProteinsBacterial ProteinsBenzothiazolesEndopeptidase KFormatesformic acidProtein Aggregatesthioflavin TUreafibrillationfunctional amyloidmicrobiomeParkinson's diseaseproteomics

Identifiers

PMID34075639
PMCPMC8376423
OpenAlexW3164018094

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.