Evidence map›Paper›PMID 34099696›Full record

ArticleNature communications2021

Intracellular artificial supramolecules based on de novo designed Y15 peptides.

Takayuki Miki, Taichi Nakai, Masahiro Hashimoto, Keigo Kajiwara, Hiroshi Tsutsumi, Hisakazu Mihara

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.8field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 27 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Takayuki MikiSchool of Life Science and Technology, Tokyo Institute of Technology, Yokohama, Kanagawa, Japan. tmiki@bio.titech.ac.jp.ORCID 0000-0002-1275-6556
Taichi NakaiSchool of Life Science and Technology, Tokyo Institute of Technology, Yokohama, Kanagawa, Japan.
Masahiro HashimotoSchool of Life Science and Technology, Tokyo Institute of Technology, Yokohama, Kanagawa, Japan.ORCID 0000-0003-4188-4853
Keigo KajiwaraSchool of Life Science and Technology, Tokyo Institute of Technology, Yokohama, Kanagawa, Japan.
Hiroshi TsutsumiSchool of Life Science and Technology, Tokyo Institute of Technology, Yokohama, Kanagawa, Japan.
Hisakazu MiharaSchool of Life Science and Technology, Tokyo Institute of Technology, Yokohama, Kanagawa, Japan.ORCID 0000-0003-3549-2036
Tokyo Institute of Technology · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

De novo designed self-assembling peptides (SAPs) are promising building blocks of supramolecular biomaterials, which can fulfill a wide range of applications, such as scaffolds for tissue culture, three-dimensional cell culture, and vaccine adjuvants. Nevertheless, the use of SAPs in intracellular spaces has mostly been unexplored. Here, we report a self-assembling peptide, Y15 (YEYKYEYKYEYKYEY), which readily forms β-sheet structures to facilitate bottom-up synthesis of functional protein assemblies in living cells. Superfolder green fluorescent protein (sfGFP) fused to Y15 assembles into fibrils and is observed as fluorescent puncta in mammalian cells. Y15 self-assembly is validated by fluorescence anisotropy and pull-down assays. By using the Y15 platform, we demonstrate intracellular reconstitution of Nck assembly, a Src-homology 2 and 3 domain-containing adaptor protein. The artificial clusters of Nck induce N-WASP (neural Wiskott-Aldrich syndrome protein)-mediated actin polymerization, and the functional importance of Nck domain valency and density is evaluated.

Indexed as

ActinsAdaptor Proteins, Signal TransducingAnimalsBiocompatible MaterialsChlorocebus aethiopsCOS CellsHEK293 CellsHumansOncogene ProteinsPeptide Biosynthesis, Nucleic Acid-IndependentPeptidesProtein Conformation, beta-StrandProtein DomainsProtein MultimerizationWiskott-Aldrich Syndrome Protein, NeuronalActinsAdaptor Proteins, Signal TransducingBiocompatible MaterialsNck proteinOncogene ProteinsPeptidesWASL protein, humanWiskott-Aldrich Syndrome Protein, Neuronal

Identifiers

PMID34099696
PMCPMC8185068
OpenAlexW3171942462

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.