Evidence map›Paper›PMID 34099871›Full record

ArticleModern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc2021

EWSR1-PATZ1 fusion renal cell carcinoma: a recurrent gene fusion characterizing thyroid-like follicular renal cell carcinoma.

Khaleel I Al-Obaidy, Julia A Bridge, Liang Cheng, Janos Sumegi, Victor E Reuter, Ryma Benayed, Meera Hameed, Sean R Williamson, Ondrej Hes, Fatimah I Alruwaii and 6 more

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In one paragraph

Article in Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
5.3field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 45 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Review
  8. Genomic alterations and diagnosis of renal cancer.Virchows Archiv : an international journal of pathology · 2024
    Review
  9. Article
  10. Article
  11. Article
  12. Small round cell sarcomas.Nature reviews. Disease primers · 2022
    Review
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 7 institutions in 2 countries.

Khaleel I Al-Obaidy *Department of Pathology and Laboratory Medicine, Indiana University School of Medicine, Indianapolis, IN, USA.ORCID 0000-0001-9890-8751
Julia A Bridge *Division of Molecular Pathology, ProPath, Dallas, TX, USA.
Liang ChengDepartment of Pathology and Laboratory Medicine, Indiana University School of Medicine, Indianapolis, IN, USA.ORCID 0000-0001-6049-5293
Janos SumegiThe Translational Genomics Research Institute, Phoenix, AZ, USA.
Victor E ReuterDepartment of Pathology, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Ryma BenayedDepartment of Pathology, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Meera HameedDepartment of Pathology, Memorial Sloan Kettering Cancer Center, New York, NY, USA.ORCID 0000-0002-2766-243X
Sean R WilliamsonDepartment of Pathology, Cleveland Clinic, Cleveland, OH, USA.ORCID 0000-0002-3898-1460
Ondrej HesDepartment of Pathology, Charles University Hospital Pilsen, Pilsen, Czech Republic.
Fatimah I AlruwaiiDepartment of Pathology and Laboratory Medicine, Indiana University School of Medicine, Indianapolis, IN, USA.
Jeremy P SegalDepartment of Pathology, University of Chicago Medical Center, Chicago, IL, USA.
Pankhuri WanjariDepartment of Pathology, University of Chicago Medical Center, Chicago, IL, USA.
Muhammad T IdreesDepartment of Pathology and Laboratory Medicine, Indiana University School of Medicine, Indianapolis, IN, USA.
Mehdi NassiriDepartment of Pathology and Laboratory Medicine, Indiana University School of Medicine, Indianapolis, IN, USA.
John N EbleDepartment of Pathology and Laboratory Medicine, Indiana University School of Medicine, Indianapolis, IN, USA. jeble@iupui.edu.
David J GrignonDepartment of Pathology and Laboratory Medicine, Indiana University School of Medicine, Indianapolis, IN, USA.
Indiana University School of MedicineMemorial Sloan Kettering Cancer Center · USUniversity of Chicago Medical Center · USCharles University · CZCleveland Clinic · USPropath Services (United States) · USTranslational Genomics Research Institute · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Thyroid-like follicular renal cell carcinoma is an uncommon kidney tumor with no distinct molecular alteration described to date. This cohort of eight women with mean and median ages of 45 and 46 years, respectively (range 19-65 years), had unencapsulated, well-circumscribed tumors composed of tightly packed anastomosing follicle-like cysts filled with eosinophilic colloid-like material and lined by cuboidal cells with high nuclear to cytoplasmic ratios, oval to elongated nuclei with perpendicular arrangement toward the lumens, and prominent nuclear overlapping. The stroma between these was minimal with the exception of two tumors. Calcifications and necrosis were absent. Immunohistochemically, the tumors were positive for KRT19 (7/7), PAX8 (5/5), cyclin D1 (6/6), KRT7 (5/7), and AMACR (1/5; focal, weak), and were negative for WT1, TTF1 (transcription termination factor-1), and thyroglobulin. In three of three tumors tested molecularly, EWSR1-PATZ1 fusion was identified by RNA sequencing and confirmed by RT-PCR and Sanger sequencing. Over a follow-up period of 1-7 years, no evidence of recurrence or metastasis has been detected. The EWSR1-PATZ1 fusion has been recognized as a recurrent alteration in a subset of round to spindle cell sarcomas with EWSR1-non-ETS fusions (EWSR1-PATZ1 sarcoma) and in several central nervous system tumors. The finding of an EWSR1-PATZ1 fusion in all three of the thyroid-like follicular renal cell carcinomas for which sufficient tissue was available for genomic profiling provides the first distinct molecular abnormality in thyroid-like follicular renal cell carcinomas, supporting its designation as a distinct diagnostic entity.

Indexed as

Oncogene FusionAdultAgedCarcinoma, Renal CellFemaleHumansKidney NeoplasmsKruppel-Like Transcription FactorsMaleMiddle AgedRepressor ProteinsRNA-Binding Protein EWSYoung AdultKruppel-Like Transcription FactorsPATZ1 protein, humanRepressor ProteinsRNA-Binding Protein EWS

Identifiers

PMID34099871
OpenAlexW3166280199

What Socratic holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.