Evidence map›Paper›PMID 34125409›Full record

ReviewCurrent osteoporosis reports2021

Using "-omics" Data to Inform Genome-wide Association Studies (GWASs) in the Osteoporosis Field.

Abdullah Abood, Charles R Farber

Abstract readReview
In one paragraph

Review in Current osteoporosis reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
  4. Review
  5. Article
  6. SP7: from Bone Development to Skeletal Disease.Current osteoporosis reports · 2023
    Review
  7. Identification of Known and Novel Long Noncoding RNAs Potentially Responsible for the Effects of Bone Mineral Density (BMD) Genomewide Association Study (GWAS) Loci.Journal of bone and mineral research : the official journal of the American Society for Bone and Mineral Research · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Abdullah AboodCenter for Public Health Genomics, University of Virginia, 800717, Charlottesville, VA, 22908, USA.
Charles R FarberCenter for Public Health Genomics, University of Virginia, 800717, Charlottesville, VA, 22908, USA. crf2s@virginia.edu.ORCID 0000-0002-6748-4711

Funding

A Systems Genetics Approach to Identify BMD GenesR01AR071657 · NIAMS · BOSTON UNIVERSITY MEDICAL CAMPUS · PI FARBER, CHARLES R, GERSTENFELD, LOUIS CHARLES · 2018 to 2022
$3.9M
Genetic analysis of bone strengthR01AR068345 · NIAMS · UNIVERSITY OF VIRGINIA · PI FARBER, CHARLES R, HOROWITZ, MARK C · 2016 to 2020
$3.1M
Informing Osteoporosis GWAS Using NetworksR01AR077992 · NIAMS · UNIVERSITY OF VIRGINIA · PI FARBER, CHARLES R · 2020 to 2025
$2.8M
Systems Genetics of Osteoblast ActivityR01AR064790 · NIAMS · UNIVERSITY OF VIRGINIA · PI ACKERT-BICKNELL, CHERYL LYNNE, FARBER, CHARLES R · 2015 to 2019
$2.0M
Transdisciplinary Big Data Science Training at UVaT32LM012416 · NLM · UNIVERSITY OF VIRGINIA · PI BROWN, DONALD E, LOUGHRAN, THOMAS P. · 2016 to 2020
$1.3M
Functional Dissection of the MARK3 GWAS Locus for Bone Mineral DensityR56AR076707 · NIAMS · JOHNS HOPKINS UNIVERSITY · PI CLEMENS, THOMAS L, FARBER, CHARLES R · 2020 to 2020
$549k
NIAMS NIH HHS R01AR064790NIAMS NIH HHS R01 AR068345NIAMS NIH HHS R01AR068345NIAMS NIH HHS R01 AR071657NIAMS NIH HHS R01AR071657NIAMS NIH HHS R01 AR077992NIAMS NIH HHS R01AR077992NIAMS NIH HHS R56AR076707NIH HHS T32LM012416NLM NIH HHS T32 LM012416
6 · The paper itself

Abstract

purpose of reviewOsteoporosis constitutes a major societal health problem. Genome-wide association studies (GWASs) have identified over 1100 loci influencing bone mineral density (BMD); however, few of the causal genes have been identified. Here, we review approaches that use "-omics" data and genetic- and systems genetics-based analytical strategies to facilitate causal gene discovery. RECENT

findingsThe bone field is beginning to adopt approaches that are commonplace in other disease disciplines. The slower progress has been due in part to the lack of large-scale "omics" data on bone and bone cells. This is however changing, and approaches such as eQTL colocalization, transcriptome-wide association studies (TWASs), network, and integrative approaches are beginning to provide significant insight into the genes responsible for BMD GWAS associations. The use of "-omics" data to inform BMD GWASs has increased in recent years, leading to the identification of novel regulators of BMD in humans. The ultimate goal will be to use this information to develop more effective therapies to treat and ultimately prevent osteoporosis.

Indexed as

Genome-Wide Association StudyGenomicsBone DensityHumansOsteoporosisTranscriptomeBone mineral density (BMD)Co-expression networkseQTL colocalizationGenome-wide association study (GWAS)OsteoporosisSystems genetics

Identifiers

PMID34125409
PMCPMC8767463

What Socratic holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.