Evidence map›Paper›PMID 34132575›Full record

ArticleJournal of virology2021

APOBEC3F Constitutes a Barrier to Successful Cross-Species Transmission of Simian Immunodeficiency Virus SIVsmm to Humans.

Rayhane Nchioua, Dorota Kmiec, Amit Gaba, Christina M Stürzel, Tyson Follack, Stephen Patrick, Andrea Kirmaier, Welkin E Johnson, Beatrice H Hahn, Linda Chelico and 1 more

Open access · greenAbstract read
In one paragraph

Article in Journal of virology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.0field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 9 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 3 countries.

Rayhane Nchioua *Institute of Molecular Virology, Ulm University Medical Center, Ulm, Germany.
Dorota Kmiec *Institute of Molecular Virology, Ulm University Medical Center, Ulm, Germany.
Amit GabaBiochemistry, Microbiology, and Immunology, College of Medicine, University of Saskatchewan, Saskatoon, Saskatchewan, Canada.
Christina M StürzelInstitute of Molecular Virology, Ulm University Medical Center, Ulm, Germany.
Tyson FollackBiochemistry, Microbiology, and Immunology, College of Medicine, University of Saskatchewan, Saskatoon, Saskatchewan, Canada.
Stephen PatrickBiochemistry, Microbiology, and Immunology, College of Medicine, University of Saskatchewan, Saskatoon, Saskatchewan, Canada.
Andrea KirmaierBiology Department, Boston College, Chestnut Hill, Massachusetts, USA.
Welkin E JohnsonBiology Department, Boston College, Chestnut Hill, Massachusetts, USA.
Beatrice H HahnDepartment of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, USA.
Linda ChelicoBiochemistry, Microbiology, and Immunology, College of Medicine, University of Saskatchewan, Saskatoon, Saskatchewan, Canada.
Frank KirchhoffInstitute of Molecular Virology, Ulm University Medical Center, Ulm, Germany.
Universität Ulm · DEUniversity of Saskatchewan · CABoston College · USUniversity of Pennsylvania · US

Funding

First-in-human study of two anti-SARS CoV-2 antibodies in health volunteersUM1AI126620 · NIAID · WISTAR INSTITUTE · PI MONTANER, LUIS J, RILEY, JAMES L. · 2016 to 2021
$24.5M
Optimizing glycan shield coverage, germline B cell receptor binding and epitope diversity of V2-apex targeted HIV-1 Env immunogensR37AI150590 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI Beatrice H Hahn · 2019 to 2026
$6.9M
Natural SIV Reservoirs and Human Zoonotic RiskR01AI050529 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI HAHN, BEATRICE H · 2001 to 2022
$6.1M
Natural SIV Reservoirs and Human Zoonotic RiskR37AI050529 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI HAHN, BEATRICE H · 2008 to 2017
$5.7M
Cross-Species transmission and adaptation of primate lentivirusesR01AI083118 · NIAID · HARVARD MEDICAL SCHOOL · PI JOHNSON, WELKIN E · 2009 to 2019
$4.0M
Baden-Württemberg Stiftung (Baden-Württemberg Foundation) BWST_ISF2018-032Deutsche Forschungsgemeinschaft (DFG) CRC1279Deutsche Forschungsgemeinschaft (DFG) SPP 1923HHS | NIH | NIH Clinical Center (Clinical Center) AI050529HHS | NIH | NIH Clinical Center (Clinical Center) AI083118HHS | NIH | NIH Clinical Center (Clinical Center) AI126620NIAID NIH HHS R01 AI050529NIAID NIH HHS R01 AI083118NIAID NIH HHS R37 AI050529NIAID NIH HHS R37 AI150590NIAID NIH HHS UM1 AI126620
6 · The paper itself

Abstract

Simian immunodeficiency virus infecting sooty mangabeys (SIVsmm) has been transmitted to humans on at least nine occasions, giving rise to human immunodeficiency virus type 2 (HIV-2) groups A to I. SIVsmm isolates replicate in human T cells and seem capable of overcoming major human restriction factors without adaptation. However, only groups A and B are responsible for the HIV-2 epidemic in sub-Saharan Africa, and it is largely unclear whether adaptive changes were associated with spread in humans. To address this, we examined the sensitivity of infectious molecular clones (IMCs) of five HIV-2 strains and representatives of five different SIVsmm lineages to various APOBEC3 proteins. We confirmed that SIVsmm strains replicate in human T cells, albeit with more variable replication fitness and frequently lower efficiency than HIV-2 IMCs. Efficient viral propagation was generally dependent on intact

Indexed as

Host-Pathogen InteractionsAnimalsCercocebus atysCytosine DeaminaseDisease Transmission, InfectiousGene Products, vifHIV-2HIV InfectionsHumansMutationSimian Acquired Immunodeficiency SyndromeSimian Immunodeficiency VirusVirus ReplicationAPOBEC3F protein, humanCytosine DeaminaseGene Products, vifAPOBEC3HIV-2SIVsmmVif

Identifiers

PMID34132575
PMCPMC8354236
OpenAlexW3170037691

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.