Evidence map›Paper›PMID 34154398›Full record

ArticlemBio2021

Identification of Oxygen-Independent Pathways for Pyridine Nucleotide and Coenzyme A Synthesis in Anaerobic Fungi by Expression of Candidate Genes in Yeast.

Thomas Perli, Aurin M Vos, Jonna Bouwknegt, Wijb J C Dekker, Sanne J Wiersma, Christiaan Mooiman, Raúl A Ortiz-Merino, Jean-Marc Daran, Jack T Pronk

Open access · goldAbstract read
In one paragraph

Article in mBio, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.2field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Thomas Perli *Department of Biotechnology, Delft University of Technology, Delft, The Netherlands.
Aurin M Vos *Department of Biotechnology, Delft University of Technology, Delft, The Netherlands.
Jonna BouwknegtDepartment of Biotechnology, Delft University of Technology, Delft, The Netherlands.
Wijb J C DekkerDepartment of Biotechnology, Delft University of Technology, Delft, The Netherlands.
Sanne J WiersmaDepartment of Biotechnology, Delft University of Technology, Delft, The Netherlands.
Christiaan MooimanDepartment of Biotechnology, Delft University of Technology, Delft, The Netherlands.
Raúl A Ortiz-MerinoDepartment of Biotechnology, Delft University of Technology, Delft, The Netherlands.
Jean-Marc DaranDepartment of Biotechnology, Delft University of Technology, Delft, The Netherlands.
Jack T PronkDepartment of Biotechnology, Delft University of Technology, Delft, The Netherlands.
Delft University of Technology · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Neocallimastigomycetes are unique examples of strictly anaerobic eukaryotes. This study investigates how these anaerobic fungi bypass reactions involved in synthesis of pyridine nucleotide cofactors and coenzyme A that, in canonical fungal pathways, require molecular oxygen. Analysis of Neocallimastigomycetes proteomes identified a candidate l-aspartate-decarboxylase (AdcA) and l-aspartate oxidase (NadB) and quinolinate synthase (NadA), constituting putative oxygen-independent bypasses for coenzyme A synthesis and pyridine nucleotide cofactor synthesis. The corresponding gene sequences indicated acquisition by ancient horizontal gene transfer (HGT) events involving bacterial donors. To test whether these enzymes suffice to bypass corresponding oxygen-requiring reactions, they were introduced into

Indexed as

Metabolic Networks and PathwaysAnaerobiosisCoenzyme AFungiNeocallimastixNucleotidesOxygenPiromycesProteomePyridinesSaccharomyces cerevisiaeCoenzyme ANucleotidesOxygenProteomePyridinesanaerobesbiotechnologyfungiNeocallimastigomycetesnicotinic acidoxygen requirementpantothenateSaccharomyces cerevisiaevitamin biosynthesis

Identifiers

PMID34154398
PMCPMC8262920
OpenAlexW3175233131

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.