Evidence map›Paper›PMID 34155658›Full record

ArticleThe EMBO journal2021

The SAGA complex regulates early steps in transcription via its deubiquitylase module subunit USP22.

Timothy J Stanek, Victoria J Gennaro, Mason A Tracewell, Daniela Di Marcantonio, Kristen L Pauley, Sabrina Butt, Christopher McNair, Feng Wang, Andrew V Kossenkov, Karen E Knudsen and 3 more

Open access · greenAbstract read
In one paragraph

Article in The EMBO journal, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
0.8field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 17 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Reciprocal regulation of TNF receptor 1-mediated signaling and inflammatory damages by MARCH2 and USP22.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  5. Article
  6. Article
  7. Inhibition of SCFCommunications biology · 2025
    Article
  8. Bioinformatic analysis of the role of USP22 expression in hepatocellular carcinoma.International journal of clinical and experimental pathology · 2025
    Article
  9. Review
  10. Article
  11. Review
  12. Article
  13. Review
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 1 country.

Timothy J StanekDepartment of Biochemistry and Molecular Biology, Sidney Kimmel Medical College, Thomas Jefferson University, Philadelphia, PA, USA.ORCID 0000-0001-9192-4978
Victoria J GennaroDepartment of Biochemistry and Molecular Biology, Sidney Kimmel Medical College, Thomas Jefferson University, Philadelphia, PA, USA.
Mason A TracewellDepartment of Biochemistry and Molecular Biology, Sidney Kimmel Medical College, Thomas Jefferson University, Philadelphia, PA, USA.
Daniela Di MarcantonioBlood Cell Development and Function Program, Fox Chase Cancer Center, Philadelphia, PA, USA.
Kristen L PauleyDepartment of Biochemistry and Molecular Biology, Sidney Kimmel Medical College, Thomas Jefferson University, Philadelphia, PA, USA.
Sabrina ButtDepartment of Biochemistry and Molecular Biology, Sidney Kimmel Medical College, Thomas Jefferson University, Philadelphia, PA, USA.
Christopher McNairDepartment of Cancer Biology, Sidney Kimmel Medical College and Sidney Kimmel Cancer Center, Thomas Jefferson University, Philadelphia, PA, USA.
Feng WangProgenra Inc., Malvern, PA, USA.
Andrew V KossenkovBioinformatics Facility, The Wistar Institute, Philadelphia, PA, USA.
Karen E KnudsenDepartment of Cancer Biology, Sidney Kimmel Medical College and Sidney Kimmel Cancer Center, Thomas Jefferson University, Philadelphia, PA, USA.ORCID 0000-0002-1301-890X
Tauseef ButtProgenra Inc., Malvern, PA, USA.
Stephen M SykesBlood Cell Development and Function Program, Fox Chase Cancer Center, Philadelphia, PA, USA.
Steven B McMahonDepartment of Biochemistry and Molecular Biology, Sidney Kimmel Medical College, Thomas Jefferson University, Philadelphia, PA, USA.ORCID 0000-0002-3405-1768
Thomas Jefferson University · USFox Chase Cancer Center · USProgenra (United States) · USThe Wistar Institute · US

Funding

Tumor Microenvironment and MetastasisP30CA010815 · NCI · WISTAR INSTITUTE · PI Dario C Altieri · 1985 to 2026
$75.9M
USP22 Function in Advanced Prostate CancerR01CA182569 · NCI · THOMAS JEFFERSON UNIVERSITY · PI KNUDSEN, KAREN E, MCMAHON, STEVEN B. · 2015 to 2019
$2.4M
Targeting the Unfolded Protein Response in Leukemia Biology and Chemotherapy ResistanceR01CA227830 · NCI · WASHINGTON UNIVERSITY · PI SYKES, STEPHEN MATTHEW · 2019 to 2023
$1.9M
Integrative Approach to Comprehensive Analysis of High Throughput Data on a Cancer Center LevelR50CA211199 · NCI · WISTAR INSTITUTE · PI Andrew V Kossenkov · 2016 to 2026
$1.6M
Elucidating the role of the epigenetic regulator USP22 in human cancerF31CA165475 · NCI · THOMAS JEFFERSON UNIVERSITY · PI STANEK, TIMOTHY JAMES · 2012 to 2014
$127k
NCI NIH HHS F31 CA165475NCI NIH HHS P30 CA010815NCI NIH HHS R01 CA182569NCI NIH HHS R01 CA227830NCI NIH HHS R50 CA211199
6 · The paper itself

Abstract

The SAGA coactivator complex is essential for eukaryotic transcription and comprises four distinct modules, one of which contains the ubiquitin hydrolase USP22. In yeast, the USP22 ortholog deubiquitylates H2B, resulting in Pol II Ser2 phosphorylation and subsequent transcriptional elongation. In contrast to this H2B-associated role in transcription, we report here that human USP22 contributes to the early stages of stimulus-responsive transcription, where USP22 is required for pre-initiation complex (PIC) stability. Specifically, USP22 maintains long-range enhancer-promoter contacts and controls loading of Mediator tail and general transcription factors (GTFs) onto promoters, with Mediator core recruitment being USP22-independent. In addition, we identify Mediator tail subunits MED16 and MED24 and the Pol II subunit RBP1 as potential non-histone substrates of USP22. Overall, these findings define a role for human SAGA within the earliest steps of transcription.

Indexed as

ApoptosisEndoplasmic Reticulum StressHCT116 CellsHumansMediator ComplexPromoter Regions, GeneticRNA Polymerase IITranscription, GeneticUbiquitin ThiolesteraseMED16 protein, humanMED24 protein, humanMediator ComplexRNA Polymerase IIUbiquitin ThiolesteraseUsp22 protein, humanepigeneticpre-initiation complexSAGAtranscriptionUSP22

Identifiers

PMID34155658
PMCPMC8365265
OpenAlexW3174580088

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.