Evidence map›Paper›PMID 34182594›Full record

ArticleAnimal genetics2021

Exploiting within-breed variability in the autochthonous Reggiana breed identified several candidate genes affecting pigmentation-related traits, stature and udder defects in cattle.

S Bovo, G Schiavo, H Kazemi, G Moscatelli, A Ribani, M Ballan, M Bonacini, M Prandi, S Dall'Olio, L Fontanesi

Abstract read
In one paragraph

Article in Animal genetics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

S BovoDivision of Animal Sciences, Department of Agricultural and Food Science, University of Bologna, Viale Giuseppe Fanin 46, Bologna, 40127, Italy.ORCID https://orcid.org/0000-0002-5712-8211
G SchiavoDivision of Animal Sciences, Department of Agricultural and Food Science, University of Bologna, Viale Giuseppe Fanin 46, Bologna, 40127, Italy.ORCID https://orcid.org/0000-0002-3497-1337
H KazemiDivision of Animal Sciences, Department of Agricultural and Food Science, University of Bologna, Viale Giuseppe Fanin 46, Bologna, 40127, Italy.ORCID https://orcid.org/0000-0001-5820-2324
G MoscatelliDivision of Animal Sciences, Department of Agricultural and Food Science, University of Bologna, Viale Giuseppe Fanin 46, Bologna, 40127, Italy.ORCID https://orcid.org/0000-0002-6284-2911
A RibaniDivision of Animal Sciences, Department of Agricultural and Food Science, University of Bologna, Viale Giuseppe Fanin 46, Bologna, 40127, Italy.ORCID https://orcid.org/0000-0001-6778-1938
M BallanDivision of Animal Sciences, Department of Agricultural and Food Science, University of Bologna, Viale Giuseppe Fanin 46, Bologna, 40127, Italy.ORCID https://orcid.org/0000-0003-4585-7502
M BonaciniAssociazione Nazionale Allevatori Bovini di Razza Reggiana (ANABORARE), Via Masaccio 11, Reggio Emilia, 42124, Italy.
M PrandiAssociazione Nazionale Allevatori Bovini di Razza Reggiana (ANABORARE), Via Masaccio 11, Reggio Emilia, 42124, Italy.
S Dall'OlioDivision of Animal Sciences, Department of Agricultural and Food Science, University of Bologna, Viale Giuseppe Fanin 46, Bologna, 40127, Italy.ORCID https://orcid.org/0000-0003-1384-3771
L FontanesiDivision of Animal Sciences, Department of Agricultural and Food Science, University of Bologna, Viale Giuseppe Fanin 46, Bologna, 40127, Italy.ORCID https://orcid.org/0000-0001-7050-3760

Funding

Italian Ministry of Agriculture, Food and Forestry - MiPAAF)PSRN (Programma di Sviluppo Rurale Nazionale)University of Bologna RFO2019-2020
6 · The paper itself

Abstract

Autochthonous cattle breeds constitute important reservoirs of genetic diversity. Reggiana is an Italian local cattle breed reared in the north of Italy for the production of a mono-breed Parmigiano-Reggiano cheese. Reggiana cattle usually have a classical solid red coat colour and pale muzzle. As part of the strategies designed for the sustainable conservation of this genetic resource, we investigated at the genome-wise level the within-breed detected variability of three pigmentation-related traits (intensity of red coat colour, based on three classes - light/diluted, normal and dark; spotted patterns/piebaldism that sometime emerge in the breed; muzzle colour - pink/pale, grey and black), stature, presence/absence and number of supernumerary teats and teat length. A total of 1776 Reggiana cattle (about two-thirds of the extant breed population) were genotyped with the GeneSeek GGP Bovine 150k SNP array and single-marker and haplotype-based GWASs were carried out. The results indicated that two main groups of genetic factors affect the intensity of red coat colour: darkening genes (including EDN3 and a few other genes) and diluting genes (including PMEL and a few other genes). Muzzle colour was mainly determined by MC1R gene markers. Piebaldism was mainly associated with KIT gene markers. Stature was associated with BTA6 markers upstream of the NCAPG-LCORL genes. Teat defects were associated with TBX3/TBX5, MCC and LGR5 genes. Overall, the identified genomic regions not only can be directly used in selection plans in the Reggiana breed, but also contribute to clarifying the genetic mechanisms involved in determining exterior traits in cattle.

Indexed as

AnimalsBody SizeBreedingCattleFemaleGenotypeHaplotypesItalyMammary Glands, AnimalPigmentationPolymorphism, Single NucleotideBos taurusbovinecoat colourmorphometrymuzzleSNPsupernumerary teatsteat length

Identifiers

PMID34182594
PMCPMC8519023

What Socratic holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.