Evidence map›Paper›PMID 34189062›Full record

ArticleBiotechnology reports (Amsterdam, Netherlands)2021

Comparing mRNA expression and protein abundance in MDR

Alireza Hadizadeh Tasbiti, Shamsi Yari, Seyed Davar Siadat, Morteza Karimipoor, Farzad Badmasti, Morteza Masoumi, Farid Abdolrahimi, Sharareh Khanipour, Seyed Mehdi Hassanzadeh, Mostafa Ghalami Nobar and 1 more

Open access · goldAbstract read
In one paragraph

Article in Biotechnology reports (Amsterdam, Netherlands), 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.3field-weighted citation impact, top 43% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Review
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 1 country.

Alireza Hadizadeh TasbitiTuberculosis and Pulmonary Research Dept. Pasteur Institute of Iran, Tehran, Iran.
Shamsi YariTuberculosis and Pulmonary Research Dept. Pasteur Institute of Iran, Tehran, Iran.
Seyed Davar SiadatTuberculosis and Pulmonary Research Dept. Pasteur Institute of Iran, Tehran, Iran.
Morteza KarimipoorMolecular Medicine Department, Biotechnology Research Center, Pasteur Institute of Iran, Tehran, Iran.
Farzad BadmastiBacteriology Dept. Pasteur Institute of Iran, Tehran, Iran.
Morteza MasoumiTuberculosis and Pulmonary Research Dept. Pasteur Institute of Iran, Tehran, Iran.
Farid AbdolrahimiTuberculosis and Pulmonary Research Dept. Pasteur Institute of Iran, Tehran, Iran.
Sharareh KhanipourTuberculosis and Pulmonary Research Dept. Pasteur Institute of Iran, Tehran, Iran.
Seyed Mehdi HassanzadehBCG Vaccine Unit, Production and Research Complex, Pasteur Institute of Iran, Karaj, Iran.
Mostafa Ghalami NobarReference Health Laboratory, Iran Ministry of Health and Medical Education, Tehran, Iran.
Fatemeh YariBlood Transfusion Research Center, High Institute for Research and Education in Transfusion Medicine, Tehran, Iran.
Pasteur Institute of Iran · IRBiotechnology Research Center · IRHigh Institute for Education and Research in Transfusion Medicine · IRMinistry of Health and Medical Education · IR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Tuberculosis (TB) is a sizable public health threat in the world. This study was conducted to determine the differential protein composition between susceptible and MDRTB strains. Tuberculosis proteins were extracted by Triton™ X-114 and ammonium sulfate. Two-dimensional gel electrophoresis protein spots were selected for identification by mass spectrometry and mRNA expression levels were measured by real- time PCR. 2DE-Western blot and T cell epitope prediction for identified proteins were made by the IEDB server. The result shows at least six protein spots (Rv0147, Rv3597c, Rv0379, Rv3699, Rv1392 and Rv0443) were differentially expressed in MDRTB isolates. However, difference in mRNA gene expression was not found in the six mRNA genes. 2DE-Western blot procedures indicated strong reaction against MDRTB proteins corresponds to 13, 16 and 55 kDa areas that might be used as new diagnostic tools. In conclusion, these MDRTB proteins identified in this study could be reliable TB diagnostic candidates or therapeutic targets.

Indexed as

GenomicsImmune epitope databaseProteomicsTB biomarkersTB proteins

Identifiers

PMID34189062
PMCPMC8220328
OpenAlexW3171408077

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.