Evidence map›Paper›PMID 34200432›Full record

ArticleMetabolites2021

Machine Learning Algorithms, Applied to Intact Islets of Langerhans, Demonstrate Significantly Enhanced Insulin Staining at the Capillary Interface of Human Pancreatic β Cells.

Louise Cottle, Ian Gilroy, Kylie Deng, Thomas Loudovaris, Helen E Thomas, Anthony J Gill, Jaswinder S Samra, Melkam A Kebede, Jinman Kim, Peter Thorn

Open access · goldAbstract read
In one paragraph

Article in Metabolites, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.6field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 3 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Louise CottleCharles Perkins Centre, School of Medical Sciences, University of Sydney, Camperdown 2006, Australia.ORCID 0000-0002-5278-0251
Ian GilroySchool of Computer Science, University of Sydney, Camperdown 2006, Australia.ORCID 0000-0001-5227-3092
Kylie DengCharles Perkins Centre, School of Medical Sciences, University of Sydney, Camperdown 2006, Australia.ORCID 0000-0002-9096-2574
Thomas LoudovarisSt Vincent's Institute, Fitzroy 3065, Australia.
Helen E ThomasSt Vincent's Institute, Fitzroy 3065, Australia.
Anthony J GillNorthern Clinical School, University of Sydney, St Leonards 2065, Australia.
Jaswinder S SamraNorthern Clinical School, University of Sydney, St Leonards 2065, Australia.
Melkam A KebedeCharles Perkins Centre, School of Medical Sciences, University of Sydney, Camperdown 2006, Australia.ORCID 0000-0001-9686-7378
Jinman KimSchool of Computer Science, University of Sydney, Camperdown 2006, Australia.
Peter ThornCharles Perkins Centre, School of Medical Sciences, University of Sydney, Camperdown 2006, Australia.
The University of Sydney · AUSt Vincents Institute of Medical Research · AUThe University of Melbourne · AU

Funding

Diabetes Australia Y18G_THOPNational Health and Medical Research Council APP1128273National Health and Medical Research Council APP1146788
6 · The paper itself

Abstract

Pancreatic β cells secrete the hormone insulin into the bloodstream and are critical in the control of blood glucose concentrations. β cells are clustered in the micro-organs of the islets of Langerhans, which have a rich capillary network. Recent work has highlighted the intimate spatial connections between β cells and these capillaries, which lead to the targeting of insulin secretion to the region where the β cells contact the capillary basement membrane. In addition, β cells orientate with respect to the capillary contact point and many proteins are differentially distributed at the capillary interface compared with the rest of the cell. Here, we set out to develop an automated image analysis approach to identify individual β cells within intact islets and to determine if the distribution of insulin across the cells was polarised. Our results show that a U-Net machine learning algorithm correctly identified β cells and their orientation with respect to the capillaries. Using this information, we then quantified insulin distribution across the β cells to show enrichment at the capillary interface. We conclude that machine learning is a useful analytical tool to interrogate large image datasets and analyse sub-cellular organisation.

Indexed as

automationbeta cellcell segmentationdeep learninghumaninsulinisletmachine learningpolarisation

Identifiers

PMID34200432
PMCPMC8229564
OpenAlexW3168909697

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.