Evidence map›Paper›PMID 34201618›Full record

ArticleInternational journal of environmental research and public health2021

Machine Learning for Analyzing Non-Countermeasure Factors Affecting Early Spread of COVID-19.

Vito Janko, Gašper Slapničar, Erik Dovgan, Nina Reščič, Tine Kolenik, Martin Gjoreski, Maj Smerkol, Matjaž Gams, Mitja Luštrek

Abstract read
In one paragraph

Article in International journal of environmental research and public health, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Vito JankoJožef Stefan Institute, 1000 Ljubljana, Slovenia.ORCID 0000-0002-9549-9742
Gašper SlapničarJožef Stefan Institute, 1000 Ljubljana, Slovenia.ORCID 0000-0001-9540-534X
Erik DovganJožef Stefan Institute, 1000 Ljubljana, Slovenia.ORCID 0000-0003-4671-8627
Nina ReščičJožef Stefan Institute, 1000 Ljubljana, Slovenia.ORCID 0000-0001-5428-3577
Tine KolenikJožef Stefan Institute, 1000 Ljubljana, Slovenia.ORCID 0000-0002-4783-6011
Martin GjoreskiJožef Stefan Institute, 1000 Ljubljana, Slovenia.ORCID 0000-0002-1220-7418
Maj SmerkolJožef Stefan Institute, 1000 Ljubljana, Slovenia.ORCID 0000-0003-4789-2395
Matjaž GamsJožef Stefan Institute, 1000 Ljubljana, Slovenia.ORCID 0000-0002-5747-0711
Mitja LuštrekJožef Stefan Institute, 1000 Ljubljana, Slovenia.ORCID 0000-0003-3219-2935

Funding

Javna Agencija za Raziskovalno Dejavnost RS P2-0209 (B)
6 · The paper itself

Abstract

The COVID-19 pandemic affected the whole world, but not all countries were impacted equally. This opens the question of what factors can explain the initial faster spread in some countries compared to others. Many such factors are overshadowed by the effect of the countermeasures, so we studied the early phases of the infection when countermeasures had not yet taken place. We collected the most diverse dataset of potentially relevant factors and infection metrics to date for this task. Using it, we show the importance of different factors and factor categories as determined by both statistical methods and machine learning (ML) feature selection (FS) approaches. Factors related to culture (e.g., individualism, openness), development, and travel proved the most important. A more thorough factor analysis was then made using a novel rule discovery algorithm. We also show how interconnected these factors are and caution against relying on ML analysis in isolation. Importantly, we explore potential pitfalls found in the methodology of similar work and demonstrate their impact on COVID-19 data analysis. Our best models using the decision tree classifier can predict the infection class with roughly 80% accuracy.

Indexed as

COVID-19AlgorithmsHumansMachine LearningPandemicsSARS-CoV-2COVID-19feature correlationfeature significancemachine learningrisk factors

Identifiers

PMID34201618
PMCPMC8268491

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.