Evidence map›Paper›PMID 34210779›Full record

ArticleThe Journal of neuroscience : the official journal of the Society for Neuroscience2021

The Genome-Wide Binding Profile for Human RE1 Silencing Transcription Factor Unveils a Unique Genetic Circuitry in Hippocampus.

James C McGann, Michael A Spinner, Saurabh K Garg, Karin A Mullendorff, Randall L Woltjer, Gail Mandel

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of neuroscience : the official journal of the Society for Neuroscience, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
2.3field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 29 citations in OpenAlex.

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  11. Heliyon · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

James C McGannVollum Institute, Oregon Health and Science University, Portland, Oregon 97239.
Michael A SpinnerVollum Institute, Oregon Health and Science University, Portland, Oregon 97239.
Saurabh K GargVollum Institute, Oregon Health and Science University, Portland, Oregon 97239.
Karin A MullendorffVollum Institute, Oregon Health and Science University, Portland, Oregon 97239.
Randall L WoltjerDepartment of Pathology, Division of Neuropathology, Oregon Health and Science University, Portland, Oregon 97239.
Gail MandelVollum Institute, Oregon Health and Science University, Portland, Oregon 97239 mandelg@ohsu.edu.
Oregon Health & Science University · USVollum Institute · US

Funding

New roles for REST during brain maturationR01NS099374 · NINDS · OREGON HEALTH & SCIENCE UNIVERSITY · PI MANDEL, GAIL · 2017 to 2021
$2.6M
NINDS NIH HHS R01 NS099374
6 · The paper itself

Abstract

Early studies in mouse neurodevelopment led to the discovery of the RE1 Silencing Transcription Factor (REST) and its role as a master repressor of neuronal gene expression. Recently, REST was reported to also repress neuronal genes in the human adult brain. These genes were found to be involved in pro-apoptotic pathways; and their repression, associated with increased REST levels during aging, were found to be neuroprotective and conserved across species. However, direct genome-wide REST binding profiles for REST in adult brain have not been identified for any species. Here, we apply this approach to mouse and human hippocampus. We find an expansion of REST binding sites in the human hippocampus that are lacking in both mouse hippocampus and other human non-neuronal cell types. The unique human REST binding sites are associated with genes involved in innate immunity processes and inflammation signaling which, on the basis of histology and recent public transcriptomic analyses, suggest that these new target genes are repressed in glia. We propose that the increases in REST expression in mid-adulthood presage the beginning of brain aging, and that human REST function has evolved to protect the longevity and function of both neurons and glia in human brain.

Indexed as

AgedAgingAnimalsFemaleGenome-Wide Association StudyHippocampusHumansImmunity, InnateMaleMiceMiddle AgedNeurogliaNeuronsRE1-Silencing Transcription FactorRepressor ProteinsRE1-Silencing Transcription FactorRepressor ProteinsAlzheimer's diseaseChIP-seqhippocampusinnate immunityNRSFREST

Identifiers

PMID34210779
PMCPMC8336698
OpenAlexW3173939349

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.