Evidence map›Paper›PMID 34217205›Full record

ArticleBMC plant biology2021

Genome-wide identification of PTI1 family in Setaria italica and salinity-responsive functional analysis of SiPTI1-5.

Yongguan Huangfu, Jiaowen Pan, Zhen Li, Qingguo Wang, Fatemeh Mastouri, Ying Li, Stephen Yang, Min Liu, Shaojun Dai, Wei Liu

Open access · goldAbstract read
In one paragraph

Article in BMC plant biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
4.0field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 20 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Genome-Wide Analysis of the Auxin/Indoleacetic Acid (International journal of molecular sciences · 2024
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  8. Genome-Wide Identification and Expression Analysis of theInternational journal of molecular sciences · 2022
    Article
  9. Article
  10. Multi-omics intervention inFrontiers in plant science · 2022
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 7 institutions in 2 countries.

Yongguan HuangfuKey Laboratory of Saline-alkali Vegetation Ecology Restoration (Northeast Forestry University), Ministry of Education, College of Life Sciences, Northeast Forestry University, Harbin, 150040, Heilongjiang, China.
Jiaowen PanShandong Academy of Agricultural Sciences, Jinan, 250100, Shandong, China.
Zhen LiShandong Academy of Agricultural Sciences, Jinan, 250100, Shandong, China.
Qingguo WangShandong Academy of Agricultural Sciences, Jinan, 250100, Shandong, China.
Fatemeh MastouriBota Bioscience, 325 Vassar st. Suite 2a, Cambridge, MA, 02139, USA.
Ying LiKey Laboratory of Saline-alkali Vegetation Ecology Restoration (Northeast Forestry University), Ministry of Education, College of Life Sciences, Northeast Forestry University, Harbin, 150040, Heilongjiang, China.
Stephen YangInstitute for Bioscience and Biotechnology Research, 9600 Gudelsky Dr, Rockville, MD, 20850, USA.
Min LiuShandong Agriculture and Engineering University, Jinan, 250100, Shandong, China.
Shaojun DaiDevelopment Center of Plant Germplasm Resources, College of Life Sciences, Shanghai Normal University, Shanghai, 200234, China. daishaojun@hotmail.com.
Wei LiuShandong Academy of Agricultural Sciences, Jinan, 250100, Shandong, China. wheiliu@163.com.
Shandong Academy of Agricultural Sciences · CNNortheast Forestry University · CNAdvanced Bioscience Laboratories (United States) · USSelecta Biosciences (United States) · USShandong Normal University · CNShangdong Agriculture and Engineering University · CNShanghai Normal University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundPTI1 (Pto-interacting 1) protein kinase belongs to the receptor-like cytoplasmic kinase (RLCK) group of receptor-like protein kinases (RLK), but lack extracellular and transmembrane domains. PTI1 was first identified in tomato (Solanum lycopersicum) and named SlPTI1, which has been reported to interact with bacterial effector Pto, a serine/threonine protein kinase involved in plant resistance to bacterial disease. Briefly, the host PTI1 specifically recognizes and interacts with the bacterial effector AvrPto, which triggers hypersensitive cell death to inhibit the pathogen growth in the local infection site. Previous studies have demonstrated that PTI1 is associated with oxidative stress and hypersensitivity.

resultsWe identified 12 putative PTI1 genes from the genome of foxtail millet (Setaria italica) in this study. Gene replication analysis indicated that both segmental replication events played an important role in the expansion of PTI1 gene family in foxtail millet. The PTI1 family members of model plants, i.e. S. italica, Arabidopsis (Arabidopsis thaliana), rice (Oryza sativa), maize (Zea mays), S. lycopersicum, and soybean (Glycine max), were classified into six major categories according to the phylogenetic analysis, among which the PTI1 family members in foxtail millet showed higher degree of homology with those of rice and maize. The analysis of a complete set of SiPTI1 genes/proteins including classification, chromosomal location, orthologous relationships and duplication. The tissue expression characteristics revealed that SiPTI1 genes are mainly expressed in stems and leaves. Experimental qRT-PCR results demonstrated that 12 SiPTI1 genes were induced by multiple stresses. Subcellular localization visualized that all of foxtail millet SiPTI1s were localized to the plasma membrane. Additionally, heterologous expression of SiPTI1-5 in yeast and E. coli enhanced their tolerance to salt stress.

conclusionsOur results contribute to a more comprehensive understanding of the roles of PTI1 protein kinases and will be useful in prioritizing particular PTI1 for future functional validation studies in foxtail millet.

Indexed as

Genome, PlantMultigene FamilySalinityChromosomes, PlantEscherichia coliGene DuplicationGene Expression Regulation, PlantGenes, PlantMolecular Sequence AnnotationNucleotide MotifsPhylogenyPlant ProteinsSaccharomyces cerevisiaeSetaria PlantStress, PhysiologicalSyntenyPlant ProteinsExpression patternFoxtail millet (Setaria italica)Functional identificationPto-interacting 1 genes (PTI1s)Salt stress

Identifiers

PMID34217205
PMCPMC8254068
OpenAlexW3181847812

What Socratic holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.