Evidence map›Paper›PMID 34225643›Full record

ArticleBMC genomics2021

Transcriptomics unravels molecular players shaping dorsal lip hypertrophy in the vacuum cleaner cichlid, Gnathochromis permaxillaris.

Laurène Alicia Lecaudey, Pooja Singh, Christian Sturmbauer, Anna Duenser, Wolfgang Gessl, Ehsan Pashay Ahi

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.2field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 20 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 3 countries.

Laurène Alicia LecaudeyInstitute of Biology, University of Graz, Universitätsplatz 2, A-8010, Graz, Austria.
Pooja SinghInstitute of Biology, University of Graz, Universitätsplatz 2, A-8010, Graz, Austria.
Christian SturmbauerInstitute of Biology, University of Graz, Universitätsplatz 2, A-8010, Graz, Austria. christian.sturmbauer@uni-graz.at.
Anna DuenserInstitute of Biology, University of Graz, Universitätsplatz 2, A-8010, Graz, Austria.
Wolfgang GesslInstitute of Biology, University of Graz, Universitätsplatz 2, A-8010, Graz, Austria.
Ehsan Pashay AhiInstitute of Biology, University of Graz, Universitätsplatz 2, A-8010, Graz, Austria. ehsan.pashayahi@helsinki.fi.
University of Graz · AT

Funding

Austrian Science Fund FWF P 29838
6 · The paper itself

Abstract

backgroundTeleosts display a spectacular diversity of craniofacial adaptations that often mediates ecological specializations. A considerable amount of research has revealed molecular players underlying skeletal craniofacial morphologies, but less is known about soft craniofacial phenotypes. Here we focus on an example of lip hypertrophy in the benthivorous Lake Tangnayika cichlid, Gnathochromis permaxillaris, considered to be a morphological adaptation to extract invertebrates out of the uppermost layer of mud bottom. We investigate the molecular and regulatory basis of lip hypertrophy in G. permaxillaris using a comparative transcriptomic approach.

resultsWe identified a gene regulatory network involved in tissue overgrowth and cellular hypertrophy, potentially associated with the formation of a locally restricted hypertrophic lip in a teleost fish species. Of particular interest were the increased expression level of apoda and fhl2, as well as reduced expression of cyp1a, gimap8, lama5 and rasal3, in the hypertrophic lip region which have been implicated in lip formation in other vertebrates. Among the predicted upstream transcription factors, we found reduced expression of foxp1 in the hypertrophic lip region, which is known to act as repressor of cell growth and proliferation, and its function has been associated with hypertrophy of upper lip in human.

conclusionOur results provide a genetic foundation for future studies of molecular players shaping soft and exaggerated, but locally restricted, craniofacial morphological changes in fish and perhaps across vertebrates. In the future, we advocate integrating gene regulatory networks of various craniofacial phenotypes to understand how they collectively govern trophic and behavioural adaptations.

Indexed as

CichlidsTranscriptomeAnimalsForkhead Transcription FactorsHypertrophyLIM-Homeodomain ProteinsLipMuscle ProteinsPhylogenyRepressor ProteinsTranscription FactorsVacuumForkhead Transcription FactorsLIM-Homeodomain ProteinsMuscle ProteinsRepressor ProteinsTranscription FactorsAdaptationCichlidaeGene expressionLake TanganyikaLip hypertrophyRNA-seq

Identifiers

PMID34225643
PMCPMC8256507
OpenAlexW3158982234

What Socratic holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.