Evidence map›Paper›PMID 34234136›Full record

ArticleNature communications2021

NUDT15 polymorphism influences the metabolism and therapeutic effects of acyclovir and ganciclovir.

Rina Nishii, Takanori Mizuno, Daniel Rehling, Colton Smith, Brandi L Clark, Xujie Zhao, Scott A Brown, Brandon Smart, Takaya Moriyama, Yuji Yamada and 9 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed, 1 pooled it
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 1 synthesis or guideline pooled it, 24 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 6 institutions in 3 countries.

Rina NishiiDepartment of Pharmaceutical Sciences, St. Jude Children's Research Hospital, Memphis, TN, USA.
Takanori MizunoChildren's Cancer Center, National Center for Child Health and Development, Tokyo, Japan.
Daniel RehlingDepartment of Biochemistry and Biophysics, Arrhenius Laboratories for Natural Sciences, Stockholm University, Stockholm, Sweden.
Colton SmithDepartment of Pharmaceutical Sciences, St. Jude Children's Research Hospital, Memphis, TN, USA.
Brandi L ClarkDepartment of Immunology, St. Jude Children's Research Hospital, Memphis, TN, USA.
Xujie ZhaoDepartment of Pharmaceutical Sciences, St. Jude Children's Research Hospital, Memphis, TN, USA.ORCID 0000-0001-7213-2270
Scott A BrownDepartment of Immunology, St. Jude Children's Research Hospital, Memphis, TN, USA.
Brandon SmartDepartment of Pharmaceutical Sciences, St. Jude Children's Research Hospital, Memphis, TN, USA.
Takaya MoriyamaDepartment of Pharmaceutical Sciences, St. Jude Children's Research Hospital, Memphis, TN, USA.
Yuji YamadaChildren's Cancer Center, National Center for Child Health and Development, Tokyo, Japan.
Tatsuo IchinoheResearch Institute for Radiation Biology and Medicine, Hiroshima University, Hiroshima, Japan.ORCID 0000-0002-0393-4066
Makoto OnizukaTokai University School of Medicine, Kanagawa, Japan.
Yoshiko AtsutaJapanese Data Center for Hematopoietic Cell Transplantation, Aichi, Japan.
Lei YangDepartment of Chemical Biology & Therapeutics, St. Jude Children's Research Hospital, Memphis, TN, USA.
Wenjian YangDepartment of Pharmaceutical Sciences, St. Jude Children's Research Hospital, Memphis, TN, USA.
Paul G ThomasDepartment of Immunology, St. Jude Children's Research Hospital, Memphis, TN, USA.ORCID 0000-0001-7955-0256
Pål StenmarkDepartment of Biochemistry and Biophysics, Arrhenius Laboratories for Natural Sciences, Stockholm University, Stockholm, Sweden. stenmark@dbb.su.se.ORCID 0000-0003-4777-3417
Motohiro KatoChildren's Cancer Center, National Center for Child Health and Development, Tokyo, Japan. katom-tky@umin.ac.jp.ORCID 0000-0001-5145-1774
Jun J YangDepartment of Pharmaceutical Sciences, St. Jude Children's Research Hospital, Memphis, TN, USA. jun.yang@stjude.org.ORCID 0000-0002-0770-9659
St. Jude Children's Research Hospital · USNational Center For Child Health and Development · JPStockholm University · SEHiroshima University · JPThe Japanese Data Center for Hematopoietic Cell Transplantation · JPTokai University · JP

Funding

Pharmacogenetics of Nucleobase and Nucleoside Analog DrugsR35GM141947 · NIGMS · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI YANG, JUN J. · 2021 to 2025
$2.9M
NIGMS NIH HHS R35 GM141947
6 · The paper itself

Abstract

Nucleobase and nucleoside analogs (NNA) are widely used as anti-viral and anti-cancer agents, and NNA phosphorylation is essential for the activity of this class of drugs. Recently, diphosphatase NUDT15 was linked to thiopurine metabolism with NUDT15 polymorphism associated with drug toxicity in patients. Profiling NNA drugs, we identify acyclovir (ACV) and ganciclovir (GCV) as two new NNAs metabolized by NUDT15. NUDT15 hydrolyzes ACV and GCV triphosphate metabolites, reducing their effects against cytomegalovirus (CMV) in vitro. Loss of NUDT15 potentiates cytotoxicity of ACV and GCV in host cells. In hematopoietic stem cell transplant patients, the risk of CMV viremia following ACV prophylaxis is associated with NUDT15 genotype (P = 0.015). Donor NUDT15 deficiency is linked to graft failure in patients receiving CMV-seropositive stem cells (P = 0.047). In conclusion, NUDT15 is an important metabolizing enzyme for ACV and GCV, and NUDT15 variation contributes to inter-patient variability in their therapeutic effects.

Indexed as

AcyclovirAdolescentAdultAgedAnimalsAntibiotic ProphylaxisAntiviral AgentsBiological Variation, PopulationCell LineChildChild, PreschoolCrystallography, X-RayCytomegalovirusCytomegalovirus InfectionsDisease Models, AnimalDNA, ViralAcyclovirAntiviral AgentsDNA, ViralGanciclovirganciclovir triphosphateNudix HydrolasesNUDT15 protein, humanPyrophosphatases

Identifiers

PMID34234136
PMCPMC8263746
OpenAlexW3180453491

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.