Evidence map›Paper›PMID 34290238›Full record

ArticleNature communications2021

flDPnn: Accurate intrinsic disorder prediction with putative propensities of disorder functions.

Gang Hu, Akila Katuwawala, Kui Wang, Zhonghua Wu, Sina Ghadermarzi, Jianzhao Gao, Lukasz Kurgan

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 164 papers.

0numbers the graph read from it
0cells of the map it votes in
164citing papers in PubMed
18.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

164 citing papers in PubMed, 311 citations in OpenAlex.

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104 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 3 countries.

Gang Hu *School of Statistics and Data Science, LPMC and KLMDASR, Nankai University, Tianjin, China.ORCID 0000-0001-9204-9140
Akila Katuwawala *Department of Computer Science, Virginia Commonwealth University, Richmond, VA, USA.
Kui Wang *School of Mathematical Sciences and LPMC, Nankai University, Tianjin, China.
Zhonghua WuSchool of Mathematical Sciences and LPMC, Nankai University, Tianjin, China.
Sina GhadermarziDepartment of Computer Science, Virginia Commonwealth University, Richmond, VA, USA.
Jianzhao GaoSchool of Mathematical Sciences and LPMC, Nankai University, Tianjin, China.ORCID 0000-0002-9943-4786
Lukasz KurganDepartment of Computer Science, Virginia Commonwealth University, Richmond, VA, USA. lkurgan@vcu.edu.ORCID 0000-0002-7749-0314
Nankai University · CNVirginia Commonwealth University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Identification of intrinsic disorder in proteins relies in large part on computational predictors, which demands that their accuracy should be high. Since intrinsic disorder carries out a broad range of cellular functions, it is desirable to couple the disorder and disorder function predictions. We report a computational tool, flDPnn, that provides accurate, fast and comprehensive disorder and disorder function predictions from protein sequences. The recent Critical Assessment of protein Intrinsic Disorder prediction (CAID) experiment and results on other test datasets demonstrate that flDPnn offers accurate predictions of disorder, fully disordered proteins and four common disorder functions. These predictions are substantially better than the results of the existing disorder predictors and methods that predict functions of disorder. Ablation tests reveal that the high predictive performance stems from innovative ways used in flDPnn to derive sequence profiles and encode inputs. flDPnn's webserver is available at http://biomine.cs.vcu.edu/servers/flDPnn/.

Indexed as

Computational BiologyIntrinsically Disordered ProteinsMachine LearningProtein BindingSequence Analysis, ProteinIntrinsically Disordered Proteins

Identifiers

PMID34290238
PMCPMC8295265
OpenAlexW3184265853

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.