Evidence map›Paper›PMID 34310873›Full record

ArticleMolecular genetics & genomic medicine2021

Family based and case-control designs reveal an association of TFAP2A in nonsyndromic cleft lip only among Vietnamese population.

Duc Minh Nguyen, Satoshi Suzuki, Hideto Imura, Teruyuki Niimi, Hiroo Furukawa, Thanh-Van Ta, Son Minh Tong, Tra Thu Nguyen, Loc Nguyen Gia Pham, Duy Le Tran and 1 more

Open access · goldAbstract read
In one paragraph

Article in Molecular genetics & genomic medicine, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.2field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 10 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 2 countries.

Duc Minh NguyenDivision of Research and Treatment for Oral Maxillofacial Congenital Anomalies, Aichi Gakuin University, Nagoya, Japan.ORCID 0000-0002-8103-0484
Satoshi SuzukiDivision of Research and Treatment for Oral Maxillofacial Congenital Anomalies, Aichi Gakuin University, Nagoya, Japan.
Hideto ImuraDivision of Research and Treatment for Oral Maxillofacial Congenital Anomalies, Aichi Gakuin University, Nagoya, Japan.
Teruyuki NiimiDivision of Research and Treatment for Oral Maxillofacial Congenital Anomalies, Aichi Gakuin University, Nagoya, Japan.
Hiroo FurukawaDivision of Research and Treatment for Oral Maxillofacial Congenital Anomalies, Aichi Gakuin University, Nagoya, Japan.
Thanh-Van TaCenter for Gene and Protein Research, Hanoi Medical University, Hanoi, Vietnam.
Son Minh TongSchool of Odonto-stomatology, Hanoi Medical University, Hanoi, Vietnam.
Tra Thu NguyenSchool of Odonto-stomatology, Hanoi Medical University, Hanoi, Vietnam.
Loc Nguyen Gia PhamDivision of Research and Treatment for Oral Maxillofacial Congenital Anomalies, Aichi Gakuin University, Nagoya, Japan.ORCID 0000-0002-4637-7108
Duy Le TranNguyen Dinh Chieu General Hopsital, Ben Tre, Vietnam.
Nagato NatsumeDivision of Research and Treatment for Oral Maxillofacial Congenital Anomalies, Aichi Gakuin University, Nagoya, Japan.
Aichi Gakuin University · JPHanoi Medical University · VNThai Nguyen National General Hospital · VN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

aimsDozens of causative genes and their mechanisms of nonsyndromic cleft lip with or without cleft palate (NSCL/P) were revealed through genome-wide association and linkage studies. Results were, however, not always replicated in different populations or methodologies. This study used case-control and family based approaches to investigate the etiology of NSCL/P and its two subtypes: nonsyndromic cleft lip only (NSCLO) and nonsyndromic cleft lip and palate (NSCLP) among the Vietnamese population.

methodsTwo hundred and seventeen NSCL/P case-parent trios (one affected child and two parents), including 105 NSCLO and 112 NSCLP were involved for a family based design; and 273 ethnic and region-matched healthy controls with no cleft history in their families were recruited for a case-control design. Three SNPs consisting of TFAP2A (rs1675414 and rs303048) and 8q24 (rs987525) were genotyped using the TaqMan SNP genotyping assay.

resultsTFAP2A rs1675414 was associated with NSCLO, replicated by both case-control and family based tests. Other SNPs yielded no evidence of susceptibility to NSCL/P or two subtypes.

conclusionThe current investigation suggests an intriguing role of TFAP2A in the etiology of NSCLO among the Vietnamese population.

Indexed as

PedigreePolymorphism, Single NucleotideAdultChildCleft LipFemaleHumansMaleTranscription Factor AP-2VietnamTFAP2A protein, humanTranscription Factor AP-2cleftcleft lip palatenonsyndromicTFAP2AVietnamese

Identifiers

PMID34310873
PMCPMC8457689
OpenAlexW3183447847

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.