Evidence map›Paper›PMID 34339457›Full record

ArticlePLoS pathogens2021

Structural insights into Cullin4-RING ubiquitin ligase remodelling by Vpr from simian immunodeficiency viruses.

Sofia Banchenko, Ferdinand Krupp, Christine Gotthold, Jörg Bürger, Andrea Graziadei, Francis J O'Reilly, Ludwig Sinn, Olga Ruda, Juri Rappsilber, Christian M T Spahn and 3 more

Open access · goldAbstract read
In one paragraph

Article in PLoS pathogens, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.1field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 16 citations in OpenAlex.

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  11. The CRL4The EMBO journal · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 2 countries.

Sofia BanchenkoCharité-Universitätsmedizin Berlin, corporate member of Freie Universität Berlin and Humboldt-Universität zu Berlin, Institute of Medical Physics and Biophysics, Berlin, Germany.ORCID 0000-0003-2166-1222
Ferdinand KruppCharité-Universitätsmedizin Berlin, corporate member of Freie Universität Berlin and Humboldt-Universität zu Berlin, Institute of Medical Physics and Biophysics, Berlin, Germany.ORCID 0000-0002-0402-8647
Christine GottholdCharité-Universitätsmedizin Berlin, corporate member of Freie Universität Berlin and Humboldt-Universität zu Berlin, Institute of Medical Physics and Biophysics, Berlin, Germany.
Jörg BürgerCharité-Universitätsmedizin Berlin, corporate member of Freie Universität Berlin and Humboldt-Universität zu Berlin, Institute of Medical Physics and Biophysics, Berlin, Germany.
Andrea GraziadeiBioanalytics Unit, Institute of Biotechnology, Technische Universität Berlin, Berlin, Germany.ORCID 0000-0001-7709-6002
Francis J O'ReillyBioanalytics Unit, Institute of Biotechnology, Technische Universität Berlin, Berlin, Germany.ORCID 0000-0001-9258-0150
Ludwig SinnBioanalytics Unit, Institute of Biotechnology, Technische Universität Berlin, Berlin, Germany.ORCID 0000-0003-4692-0681
Olga RudaCharité-Universitätsmedizin Berlin, corporate member of Freie Universität Berlin and Humboldt-Universität zu Berlin, Institute of Medical Physics and Biophysics, Berlin, Germany.
Juri RappsilberBioanalytics Unit, Institute of Biotechnology, Technische Universität Berlin, Berlin, Germany.
Christian M T SpahnCharité-Universitätsmedizin Berlin, corporate member of Freie Universität Berlin and Humboldt-Universität zu Berlin, Institute of Medical Physics and Biophysics, Berlin, Germany.
Thorsten MielkeMicroscopy and Cryo-Electron Microscopy Service Group, Max-Planck-Institute for Molecular Genetics, Berlin, Germany.ORCID 0000-0001-9275-3146
Ian A TaylorMacromolecular Structure Laboratory, The Francis Crick Institute, London, United Kingdom.ORCID 0000-0002-6763-3852
David SchwefelCharité-Universitätsmedizin Berlin, corporate member of Freie Universität Berlin and Humboldt-Universität zu Berlin, Institute of Medical Physics and Biophysics, Berlin, Germany.ORCID 0000-0002-2945-0908
Humboldt-Universität zu Berlin · DETechnische Universität Berlin · DEMax Planck Institute for Molecular Genetics · DEThe Francis Crick Institute · GBWellcome Centre for Cell Biology · GB

Funding

Wellcome Trust 103139Wellcome Trust 103139/Z/13/ZWellcome Trust 108014/Z/15/ZWellcome Trust 203149
6 · The paper itself

Abstract

Viruses have evolved means to manipulate the host's ubiquitin-proteasome system, in order to down-regulate antiviral host factors. The Vpx/Vpr family of lentiviral accessory proteins usurp the substrate receptor DCAF1 of host Cullin4-RING ligases (CRL4), a family of modular ubiquitin ligases involved in DNA replication, DNA repair and cell cycle regulation. CRL4DCAF1 specificity modulation by Vpx and Vpr from certain simian immunodeficiency viruses (SIV) leads to recruitment, poly-ubiquitylation and subsequent proteasomal degradation of the host restriction factor SAMHD1, resulting in enhanced virus replication in differentiated cells. To unravel the mechanism of SIV Vpr-induced SAMHD1 ubiquitylation, we conducted integrative biochemical and structural analyses of the Vpr protein from SIVs infecting Cercopithecus cephus (SIVmus). X-ray crystallography reveals commonalities between SIVmus Vpr and other members of the Vpx/Vpr family with regard to DCAF1 interaction, while cryo-electron microscopy and cross-linking mass spectrometry highlight a divergent molecular mechanism of SAMHD1 recruitment. In addition, these studies demonstrate how SIVmus Vpr exploits the dynamic architecture of the multi-subunit CRL4DCAF1 assembly to optimise SAMHD1 ubiquitylation. Together, the present work provides detailed molecular insight into variability and species-specificity of the evolutionary arms race between host SAMHD1 restriction and lentiviral counteraction through Vpx/Vpr proteins.

Indexed as

UbiquitinationVirus ReplicationAmino Acid SequenceAnimalsCryoelectron MicroscopyCullin ProteinsGene Products, vprNEDD8 ProteinProteasome Endopeptidase ComplexProtein BindingSAM Domain and HD Domain-Containing Protein 1Simian Acquired Immunodeficiency SyndromeSimian Immunodeficiency VirusUbiquitin-Protein LigasesCullin ProteinsGene Products, vprNEDD8 ProteinProteasome Endopeptidase ComplexSAM Domain and HD Domain-Containing Protein 1Ubiquitin-Protein Ligases

Identifiers

PMID34339457
PMCPMC8360603
OpenAlexW3187837149

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.