Evidence map›Paper›PMID 34370778›Full record

ArticlePloS one2021

CARD11 is a prognostic biomarker and correlated with immune infiltrates in uveal melanoma.

Xueying Shi, Shilin Xia, Yingming Chu, Nan Yang, Jingyuan Zheng, Qianyi Chen, Zeng Fen, Yuankuan Jiang, Shifeng Fang, Jingrong Lin

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed, 1 pooled it
1.7field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 1 synthesis or guideline pooled it, 11 citations in OpenAlex.

  1. The multiple roles of autophagy in uveal melanoma and the microenvironment.Journal of cancer research and clinical oncology · 2024
    Pooled it
  2. Article
  3. Article
  4. Article
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  8. Machine Learning Methods for Gene Selection in Uveal Melanoma.International journal of molecular sciences · 2024
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Xueying ShiClinical Laboratory of Integrative Medicine, The First Affiliated Hospital of Dalian Medical University, Dalian, Liaoning, China.
Shilin XiaClinical Laboratory of Integrative Medicine, The First Affiliated Hospital of Dalian Medical University, Dalian, Liaoning, China.
Yingming ChuDepartment of Integrated Traditional Chinese Medicine, Peking University First Hospital, Beijing, China.
Nan YangInstitute (College) of Integrative Medicine, Dalian Medical University, Dalian, Liaoning, China.
Jingyuan ZhengInstitute (College) of Integrative Medicine, Dalian Medical University, Dalian, Liaoning, China.
Qianyi ChenInstitute (College) of Integrative Medicine, Dalian Medical University, Dalian, Liaoning, China.
Zeng FenInstitute (College) of Integrative Medicine, Dalian Medical University, Dalian, Liaoning, China.
Yuankuan JiangDepartment of Dermatology, The First Affiliated Hospital of Dalian Medical University, Dalian, Liaoning, China.
Shifeng FangDepartment of Ophthalmology, The First Affiliated Hospital of Dalian Medical University, Dalian, Liaoning, China.
Jingrong LinDepartment of Dermatology, The First Affiliated Hospital of Dalian Medical University, Dalian, Liaoning, China.ORCID 0000-0002-4737-0856
Dalian Medical University · CNPeking University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Uveal melanoma (UVM), the most common primary intraocular malignancy, has a high mortality because of a high propensity to metastasize. Our study analyzed prognostic value and immune-related characteristics of CARD11 in UVM, hoping to provide a potential management and research direction. The RNA-sequence data of 80 UVM patients were downloaded from The Cancer Genome Atlas database and divided them into high- and low-expression groups. We analyzed the differentially expressed genes, enrichment analyses and the infiltration of immune cells using the R package and Gene-Set Enrichment Analysis. A clinical prediction nomogram and protein-protein interaction network were constructed and the first 8 genes were considered as the hub-genes. Finally, we constructed a competing endogenous RNA (ceRNA) network by Cytoscape and analyzed the statistical data via the R software. Here we found that CARD11 expression had notable correlation with UVM clinicopathological features, which was also an independent predictor for overall survival (OS). Intriguingly, CARD11 had a positively correlation to autophagy, cellular senescence and apoptosis. Infiltration of monocytes was significantly higher in low CARD11 expression group, and infiltration of T cells regulatory was lower in the same group. Functional enrichment analyses revealed that CARD11 was positively related to T cell activation pathways and cell adhesion molecules. The expressions of hub-genes were all increased in the high CARD11 expression group and the ceRNA network showed the interaction among mRNA, miRNA and lncRNA. These findings show that high CARD11 expression in UVM is associated with poor OS, indicating that CARD11 may serve as a potential biomarker for the diagnosis and prognosis of the UVM.

Indexed as

Biomarkers, TumorCARD Signaling Adaptor ProteinsMelanomaUveal NeoplasmsFemaleGene Expression Regulation, NeoplasticGene Regulatory NetworksHumansMaleMiddle AgedPrognosisProtein Interaction MapsUveal MelanomaBiomarkers, TumorCARD Signaling Adaptor Proteins

Identifiers

PMID34370778
PMCPMC8351993
OpenAlexW3190191410

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.