Evidence map›Paper›PMID 34375300›Full record

ArticleThe European respiratory journal2022

Host lipidome and tuberculosis treatment failure.

Rupak Shivakoti, John W Newman, Luke Elizabeth Hanna, Artur T L Queiroz, Kamil Borkowski, Akshay N Gupte, Mandar Paradkar, Pattabiraman Satyamurthi, Vandana Kulkarni, Murugesh Selva and 16 more

Open access · bronzeAbstract read
In one paragraph

Article in The European respiratory journal, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.0field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 20 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Biomarker discovery for tuberculosis using metabolomics.Frontiers in molecular biosciences · 2023
    Review
  10. Article
  11. Biomedicines · 2022
    Article
  12. Review
  13. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

26 authors at 7 institutions in 3 countries.

Rupak ShivakotiDept of Medicine, Johns Hopkins University School of Medicine, Baltimore, MD, USA rs3895@cumc.columbia.edu.ORCID 0000-0002-2773-9310
John W NewmanObesity and Metabolism Research Unit, Western Human Nutrition Research Center, Agricultural Research Service, United States Department of Agriculture, Davis, CA, USA.
Luke Elizabeth HannaNational Institute for Research in Tuberculosis, Chennai, India.
Artur T L QueirozInstituto Goncalo Moniz, Fundação Oswaldo Cruz, Salvador, Brazil.
Kamil BorkowskiWest Coast Metabolomics Center, University of California, Davis, CA, USA.
Akshay N GupteDept of Medicine, Johns Hopkins University School of Medicine, Baltimore, MD, USA.
Mandar ParadkarByramjee-Jeejeebhoy Medical College-Johns Hopkins University Clinical Research Site, Pune, India.
Pattabiraman SatyamurthiNational Institute for Research in Tuberculosis, Chennai, India.
Vandana KulkarniByramjee-Jeejeebhoy Medical College-Johns Hopkins University Clinical Research Site, Pune, India.
Murugesh SelvaNational Institute for Research in Tuberculosis, Chennai, India.
Neeta PradhanByramjee-Jeejeebhoy Medical College-Johns Hopkins University Clinical Research Site, Pune, India.
Shri Vijay Bala Yogendra ShivakumarJohns Hopkins University, India office (Center for Clinical Global Health Education), Pune, India.
Saravanan NatarajanNational Institute for Research in Tuberculosis, Chennai, India.
Ramesh KarunaiananthamNational Institute for Research in Tuberculosis, Chennai, India.
Nikhil GupteDept of Medicine, Johns Hopkins University School of Medicine, Baltimore, MD, USA.
Kannan ThiruvengadamNational Institute for Research in Tuberculosis, Chennai, India.
Oliver FiehnWest Coast Metabolomics Center, University of California, Davis, CA, USA.
Renu BharadwajByramjee-Jeejeebhoy Government Medical College, Pune, India.
Anju KagalByramjee-Jeejeebhoy Government Medical College, Pune, India.
Sanjay GaikwadByramjee-Jeejeebhoy Government Medical College, Pune, India.ORCID 0000-0002-2411-0373
Shashikala SangleByramjee-Jeejeebhoy Government Medical College, Pune, India.
Jonathan E GolubDept of Medicine, Johns Hopkins University School of Medicine, Baltimore, MD, USA.ORCID 0000-0003-2398-3145
Bruno B AndradeInstituto Goncalo Moniz, Fundação Oswaldo Cruz, Salvador, Brazil.ORCID 0000-0001-6833-3811
Vidya MaveDept of Medicine, Johns Hopkins University School of Medicine, Baltimore, MD, USA.
Amita GuptaDept of Medicine, Johns Hopkins University School of Medicine, Baltimore, MD, USA.
Chandrasekaran PadmapriyadarsiniNational Institute for Research in Tuberculosis, Chennai, India.
Johns Hopkins University · USNational Institute of Research in Tuberculosis · INGovernment Medical College · INUniversity of California, Davis · USAgricultural Research Service · USFundação Oswaldo Cruz · BRUniversidade Federal da Bahia · BR

Funding

The Johns Hopkins Baltimore-Washington-India Clinical Trials Unit (BWI CTU)UM1AI069465 · NIAID · JOHNS HOPKINS UNIVERSITY · PI Charles W. Flexner, Amita Gupta · 2012 to 2026
$34.1M
UJMT – ORWH – Gazzetta, Issa-BoubeD43TW009340 · FIC · UNIV OF NORTH CAROLINA CHAPEL HILL · PI William Checkley, Benjamin H. Chi · 2017 to 2026
$14.8M
West Coast Central Comprehensive Metabolomics Resource Core (WC3MRC)U24DK097154 · NIDDK · UNIVERSITY OF CALIFORNIA AT DAVIS · PI FIEHN, OLIVER · 2012 to 2017
$9.9M
Fogarty Global Health Fellows Coordinating CenterR25TW009340 · FIC · UNIV OF NORTH CAROLINA CHAPEL HILL · PI CHI, BENJAMIN H. · 2012 to 2016
$6.9M
The Impact of Diabetes on TB treatment outcomesR01AI097494 · NIAID · JOHNS HOPKINS UNIVERSITY · PI GOLUB, JONATHAN E. · 2013 to 2017
$3.0M
Inflammatory determinants of disease severity and treatment outcome in TB patientsU01AI115940 · NIAID · UNIVERSITY OF CAPE TOWN · PI SHER, ALAN, WILKINSON, ROBERT JOHN · 2015 to 2019
$1.1M
HIV-TB Fogarty Research Training ProgramD43TW009574 · FIC · JOHNS HOPKINS UNIVERSITY · PI BOLLINGER, ROBERT C. · 2013 to 2017
$1.0M
MATERNAL INFLAMMATION, DIET AND GUT MICROBIOME IN HIV: IMPACT ON INFANT OUTCOMESR00HD089753 · NICHD · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI SHIVAKOTI, RUPAK · 2018 to 2020
$731k
FIC NIH HHS D43 TW009340FIC NIH HHS D43 TW009574FIC NIH HHS R25 TW009340NIAID NIH HHS R01 AI097494NIAID NIH HHS U01 AI115940NIAID NIH HHS UM1 AI069465NICHD NIH HHS R00 HD089753NIDDK NIH HHS U24 DK097154
6 · The paper itself

Abstract

introductionHost lipids play important roles in tuberculosis (TB) pathogenesis. Whether host lipids at TB treatment initiation (baseline) affect subsequent treatment outcomes has not been well characterised. We used unbiased lipidomics to study the prospective association of host lipids with TB treatment failure.

methodsA case-control study (n=192), nested within a prospective cohort study, was used to investigate the association of baseline plasma lipids with TB treatment failure among adults with pulmonary TB. Cases (n=46) were defined as TB treatment failure, while controls (n=146) were those without failure. Complex lipids and inflammatory lipid mediators were measured using liquid chromatography mass spectrometry techniques. Adjusted least-square regression was used to assess differences in groups. In addition, machine learning identified lipids with highest area under the curve (AUC) to classify cases and controls.

resultsBaseline levels of 32 lipids differed between controls and those with treatment failure after false discovery rate adjustment. Treatment failure was associated with lower baseline levels of cholesteryl esters and oxylipin, and higher baseline levels of ceramides and triglycerides compared to controls. Two cholesteryl ester lipids combined in a unique classifier model provided an AUC of 0.79 (95% CI 0.65-0.93) in the test dataset for prediction of TB treatment failure.

conclusionsWe identified lipids, some with known roles in TB pathogenesis, associated with TB treatment failure. In addition, a lipid signature with prognostic accuracy for TB treatment failure was identified. These lipids could be potential targets for risk-stratification, adjunct therapy and treatment monitoring.

Indexed as

LipidomicsTuberculosisAdultBiomarkersCase-Control StudiesHumansProspective StudiesTreatment FailureBiomarkers

Identifiers

PMID34375300
PMCPMC9625841
OpenAlexW3192107155

What Socratic holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.