Evidence map›Paper›PMID 34384464›Full record

ReviewMolecular neurodegeneration2021

Proteomic landscape of Alzheimer's Disease: novel insights into pathogenesis and biomarker discovery.

Bing Bai, David Vanderwall, Yuxin Li, Xusheng Wang, Suresh Poudel, Hong Wang, Kaushik Kumar Dey, Ping-Chung Chen, Ka Yang, Junmin Peng

Erratum issuedOpen access · goldAbstract readReview
In one paragraph

Review in Molecular neurodegeneration, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 156 papers, 5 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
156citing papers in PubMed, 5 pooled it
22.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

156 citing papers in PubMed, 5 syntheses or guidelines pooled it, 259 citations in OpenAlex.

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96 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Bing Bai *Departments of Structural Biology and Developmental Neurobiology, St. Jude Children's Research Hospital, 38105, Memphis, TN, USA. Bing.Bai@nju.edu.cn.
David Vanderwall *Departments of Structural Biology and Developmental Neurobiology, St. Jude Children's Research Hospital, 38105, Memphis, TN, USA. David.Vanderwall@STJUDE.ORG.
Yuxin LiDepartments of Structural Biology and Developmental Neurobiology, St. Jude Children's Research Hospital, 38105, Memphis, TN, USA.
Xusheng WangCenter for Proteomics and Metabolomics, St. Jude Children's Research Hospital, 38105, Memphis, TN, USA.
Suresh PoudelDepartments of Structural Biology and Developmental Neurobiology, St. Jude Children's Research Hospital, 38105, Memphis, TN, USA.
Hong WangDepartments of Structural Biology and Developmental Neurobiology, St. Jude Children's Research Hospital, 38105, Memphis, TN, USA.
Kaushik Kumar DeyDepartments of Structural Biology and Developmental Neurobiology, St. Jude Children's Research Hospital, 38105, Memphis, TN, USA.
Ping-Chung ChenDepartments of Structural Biology and Developmental Neurobiology, St. Jude Children's Research Hospital, 38105, Memphis, TN, USA.
Ka YangDepartments of Structural Biology and Developmental Neurobiology, St. Jude Children's Research Hospital, 38105, Memphis, TN, USA.
Junmin PengDepartments of Structural Biology and Developmental Neurobiology, St. Jude Children's Research Hospital, 38105, Memphis, TN, USA.
St. Jude Children's Research Hospital · US

Funding

Utilization of proteomics and lipidomics to identify modifiers of LBDU54NS110435 · NINDS · MAYO CLINIC JACKSONVILLE · PI MCLEAN, PAMELA J · 2019 to 2023
$14.5M
Systems Approaches to Novel Molecular Mechanism in Alzheimer's DiseaseRF1AG064909 · NIA · UT SOUTHWESTERN MEDICAL CENTER · PI PENG, JUNMIN, YU, GANG · 2019 to 2024
$6.4M
Dissecting neuron-microglia-astrocyte interaction in AD pathogenesisRF1AG068581 · NIA · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI PENG, JUNMIN, ROSSOLL, WILFRIED · 2020 to 2023
$5.4M
Multi-level Integrative Proteomics to Alzheimer's Disease PathwaysR01AG053987 · NIA · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI PENG, JUNMIN · 2016 to 2020
$2.2M
RNA splicing dysfunction in Alzheimer's diseaseR01AG047928 · NIA · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI PENG, JUNMIN · 2015 to 2019
$1.8M
Proteomics Approaches to Protein TurnoverR01GM114260 · NIGMS · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI PENG, JUNMIN · 2016 to 2019
$1.4M
Dissecting neuron-microglia-astrocyte interaction in AD pathogenesisR01AG068581 · NIA · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI PENG, JUNMIN, ROSSOLL, WILFRIED · 2024 to 2024
$1.2M
NIA NIH HHS R01 AG047928NIA NIH HHS R01 AG053987NIA NIH HHS R01 AG068581NIA NIH HHS RF1 AG064909NIA NIH HHS RF1 AG068581NIGMS NIH HHS R01 GM114260NINDS NIH HHS U54 NS110435
6 · The paper itself

Abstract

Mass spectrometry-based proteomics empowers deep profiling of proteome and protein posttranslational modifications (PTMs) in Alzheimer's disease (AD). Here we review the advances and limitations in historic and recent AD proteomic research. Complementary to genetic mapping, proteomic studies not only validate canonical amyloid and tau pathways, but also uncover novel components in broad protein networks, such as RNA splicing, development, immunity, membrane transport, lipid metabolism, synaptic function, and mitochondrial activity. Meta-analysis of seven deep datasets reveals 2,698 differentially expressed (DE) proteins in the landscape of AD brain proteome (n = 12,017 proteins/genes), covering 35 reported AD genes and risk loci. The DE proteins contain cellular markers enriched in neurons, microglia, astrocytes, oligodendrocytes, and epithelial cells, supporting the involvement of diverse cell types in AD pathology. We discuss the hypothesized protective or detrimental roles of selected DE proteins, emphasizing top proteins in "amyloidome" (all biomolecules in amyloid plaques) and disease progression. Comprehensive PTM analysis represents another layer of molecular events in AD. In particular, tau PTMs are correlated with disease stages and indicate the heterogeneity of individual AD patients. Moreover, the unprecedented proteomic coverage of biofluids, such as cerebrospinal fluid and serum, procures novel putative AD biomarkers through meta-analysis. Thus, proteomics-driven systems biology presents a new frontier to link genotype, proteotype, and phenotype, accelerating the development of improved AD models and treatment strategies.

Indexed as

ProteomeAlzheimer DiseaseAsymptomatic DiseasesBiomarkersBlood ProteinsCerebrospinal Fluid ProteinsChromatography, LiquidCognitive DysfunctionDatabases, ProteinData MiningDatasets as TopicHumansMeta-Analysis as TopicNerve Tissue ProteinsPlaque, AmyloidProtein Processing, Post-TranslationalBiomarkersBlood ProteinsCerebrospinal Fluid ProteinsNerve Tissue ProteinsProteomeAbetaAlzheimer’s diseaseAmyloidomeBiomarkerMass spectrometryPathogenesisProteomeProteomicsPTMTau

Identifiers

PMID34384464
PMCPMC8359598
OpenAlexW3190031729

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.