Evidence map›Paper›PMID 34430792›Full record

ArticlePlant direct2021

Differential nuclease sensitivity profiling uncovers a drought responsive change in maize leaf chromatin structure for two large retrotransposon derivatives,

Minkyu Park, Delvin S Williams, Zachary M Turpin, ZaDarreyal J Wiggins, Violeta M Tsolova, Oghenekome U Onokpise, Hank W Bass

Open access · goldAbstract read
In one paragraph

Article in Plant direct, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.7field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 3 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Minkyu ParkCenter for Viticulture and Small Fruit Research Florida A&M University Tallahassee Florida USA.ORCID https://orcid.org/0000-0001-5009-2810
Delvin S WilliamsCollege of Agriculture and Food Sciences Florida A&M University Tallahassee Florida USA.ORCID https://orcid.org/0000-0003-2699-9433
Zachary M TurpinDepartment of Biological Science Florida State University Tallahassee Florida USA.
ZaDarreyal J WigginsCollege of Agriculture and Food Sciences Florida A&M University Tallahassee Florida USA.
Violeta M TsolovaCenter for Viticulture and Small Fruit Research Florida A&M University Tallahassee Florida USA.
Oghenekome U OnokpiseCollege of Agriculture and Food Sciences Florida A&M University Tallahassee Florida USA.
Hank W BassDepartment of Biological Science Florida State University Tallahassee Florida USA.ORCID https://orcid.org/0000-0003-0522-0881
Florida Agricultural and Mechanical University · USFlorida State University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Plant chromatin dynamics are generally recognized as playing a role in the genomic response to environmental stress. Although stress-induced transcriptional activities of LTR-retrotransposons have been reported, whether the stress response can be detected at the level of chromatin structure for LTR-retrotransposons is largely unknown. Using differential nuclease sensitivity profiling, we identified that two out of 29 maize LTR-retrotransposon families change their chromatin structure in response to drought stress in leaf tissue. The two LTR-retrotransposon families,

Indexed as

chromatindifferential nuclease sensitivitydrought stressLTR‐retrotransposonmaizemicrococcal nucleaseMNaseopen chromatin

Identifiers

PMID34430792
PMCPMC8365550
OpenAlexW3195976229

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.