Evidence map›Paper›PMID 34440765›Full record

ArticleCells2021

Autophagy and Mitophagy-Related Pathways at the Crossroads of Genetic Pathways Involved in Familial Sarcoidosis and Host-Pathogen Interactions Induced by Coronaviruses.

Yves Pacheco, Dominique Valeyre, Thomas El Jammal, Maxime Vallee, Fabien Chevalier, Jérôme Lamartine, Dominique Sigaudo-Roussel, Bernard Verrier, Dominique Israel-Biet, Nathalie Freymond and 2 more

Abstract readComparative Study
In one paragraph

Article in Cells, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
  4. Infectious Complications of Pulmonary Sarcoidosis.Journal of clinical medicine · 2024
    Review
  5. Article
  6. Article
  7. Article
  8. Review
  9. Review
  10. Frontiers in medicine · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Yves PachecoLaboratory of Tissue Biology and Therapeutic Engineering, CNRS UMR5305, Claude Bernard University Lyon I, IBCP, 69007 Lyon, France.
Dominique ValeyreUMR INSERM 1272, University Sorbonne Paris Nord, Hospital Paris-Saint Joseph, 75014 Paris, France.
Thomas El JammalLaboratory of Tissue Biology and Therapeutic Engineering, CNRS UMR5305, Claude Bernard University Lyon I, IBCP, 69007 Lyon, France.
Maxime ValleeDepartment of Bioinformatics, Hospices Civils de Lyon, 69007 Lyon, France.
Fabien ChevalierLaboratory of Tissue Biology and Therapeutic Engineering, CNRS UMR5305, Claude Bernard University Lyon I, IBCP, 69007 Lyon, France.
Jérôme LamartineLaboratory of Tissue Biology and Therapeutic Engineering, CNRS UMR5305, Claude Bernard University Lyon I, IBCP, 69007 Lyon, France.
Dominique Sigaudo-RousselLaboratory of Tissue Biology and Therapeutic Engineering, CNRS UMR5305, Claude Bernard University Lyon I, IBCP, 69007 Lyon, France.
Bernard VerrierLaboratory of Tissue Biology and Therapeutic Engineering, CNRS UMR5305, Claude Bernard University Lyon I, IBCP, 69007 Lyon, France.ORCID 0000-0002-8478-7095
Dominique Israel-BietDepartment of Pulmonology AP-HP, Georges Pompidou European Hospital, 75014 Paris, France.
Nathalie FreymondDepartment of Respiratory Medicine, Hospices Civils de Lyon, Lyon South Hospital, 69007 Lyon, France.
Vincent CottinDepartment of Respiratory Medicine, Hospices Civils de Lyon, National Reference Centre for Rare Pulmonary Diseases, Louis Pradel Hospital, Claude-Bernard Lyon 1, 69007 Lyon, France.
Alain CalenderLaboratory of Tissue Biology and Therapeutic Engineering, CNRS UMR5305, Claude Bernard University Lyon I, IBCP, 69007 Lyon, France.

Funding

Ministère des Affaires Sociales et de la Santé 12-027-0309
6 · The paper itself

Abstract

Sarcoidosis is a multisystem disease characterized by the development and accumulation of granulomas, the hallmark of an inflammatory process induced by environmental and/or infectious and or genetic factors. This auto-inflammatory disease mainly affects the lungs, the gateway to environmental aggressions and viral infections. We have shown previously that genetic predisposition to sarcoidosis occurring in familial cases is related to a large spectrum of pathogenic variants with, however, a clustering around mTOR (mammalian Target Of Rapamycin)-related pathways and autophagy regulation. The context of the COVID-19 pandemic led us to evaluate whether such genetic defects may increase the risk of a severe course of SARS-CoV2 infection in patients with sarcoidosis. We extended a whole exome screening to 13 families predisposed to sarcoidosis and crossed the genes sharing mutations with the list of genes involved in the SARS-CoV2 host-pathogen protein-protein interactome. A similar analysis protocol was applied to a series of 100 healthy individuals. Using ENRICH.R, a comprehensive gene set enrichment web server, we identified the functional pathways represented in the set of genes carrying deleterious mutations and confirmed the overrepresentation of autophagy- and mitophagy-related functions in familial cases of sarcoidosis. The same protocol was applied to the set of genes common to sarcoidosis and the SARS-CoV2-host interactome and found a significant enrichment of genes related to mitochondrial factors involved in autophagy, mitophagy, and RIG-I-like (Retinoic Acid Inducible Gene 1) Receptor antiviral response signaling. From these results, we discuss the hypothesis according to which sarcoidosis is a model for studying genetic abnormalities associated with host response to viral infections as a consequence of defects in autophagy and mitophagy processes.

Indexed as

AutophagyCOVID-19Exome SequencingGenomicsHumansMitophagyProtein Serine-Threonine KinasesSarcoidosisProtein Serine-Threonine KinasesTBK1 protein, humanautophagyCOVID-19geneticsmitophagysarcoidosisSARS-CoV2TANK Binding Kinase 1

Identifiers

PMID34440765
PMCPMC8393644

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.