Evidence map›Paper›PMID 34491200›Full record

ArticleeLife2021

Vision, challenges and opportunities for a Plant Cell Atlas.

Plant Cell Atlas Consortium, Suryatapa Ghosh Jha, Alexander T Borowsky, Benjamin J Cole, Noah Fahlgren, Andrew Farmer, Shao-Shan Carol Huang, Purva Karia, Marc Libault, Nicholas J Provart and 29 more

Abstract read
In one paragraph

Article in eLife, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

39 authors.

Plant Cell Atlas ConsortiumPlant Cell Atlas, Stanford, United States.
Suryatapa Ghosh Jha *Department of Plant Biology, Carnegie Institution for Science, Stanford, United States.ORCID 0000-0001-7976-1272
Alexander T Borowsky *Department of Botany and Plant Sciences, University of California, Riverside, Riverside, United States.ORCID 0000-0002-2510-8136
Benjamin J Cole *Joint Genome Institute, Lawrence Berkeley National Laboratory, Walnut Creek, United States.ORCID 0000-0001-9652-624X
Noah Fahlgren *Donald Danforth Plant Science Center, St. Louis, United States.ORCID 0000-0002-5597-4537
Andrew Farmer *National Center for Genome Resources, Santa Fe, United States.ORCID 0000-0002-4224-2433
Shao-Shan Carol Huang *Center for Genomics and Systems Biology, New York University, New York, United States.
Purva Karia *Department of Plant Biology, Carnegie Institution for Science, Stanford, United States.ORCID 0000-0002-4263-4867
Marc Libault *Department of Agronomy and Horticulture, University of Nebraska-Lincoln, Lincoln, United States.ORCID 0000-0001-7419-9129
Nicholas J Provart *Department of Cell and Systems Biology and the Centre for the Analysis of Genome Evolution and Function, University of Toronto, Toronto, Canada.ORCID 0000-0001-5551-7232
Selena L Rice *Department of Plant Biology, Carnegie Institution for Science, Stanford, United States.ORCID 0000-0001-8403-5785
Maite Saura-Sanchez *Consejo Nacional de Investigaciones Científicas y Técnicas, Instituto de Investigaciones Fisiológicas y Ecológicas Vinculadas a la Agricultura, Facultad de Agronomía, Universidad de Buenos Aires, Buenos Aires, Argentina.ORCID 0000-0001-8115-3540
Pinky AgarwalNational Institute of Plant Genome Research, New Delhi, India.
Amir H AhkamiEnvironmental Molecular Sciences Division, Pacific Northwest National Laboratory, Richland, United States.ORCID 0000-0002-0545-1236
Christopher R AndertonEnvironmental Molecular Sciences Division, Pacific Northwest National Laboratory, Richland, United States.
Steven P BriggsDepartment of Biological Sciences, University of California, San Diego, San Diego, United States.ORCID 0000-0002-7226-8618
Jennifer An BrophyDepartment of Biology, Stanford University, Stanford, United States.ORCID 0000-0001-7808-4281
Peter DenolfBASF Seeds & Traits, Ghent, Belgium.ORCID 0000-0003-4567-2700
Luigi F Di CostanzoDepartment of Agricultural Sciences, University of Naples Federico II, Napoli, Italy.ORCID 0000-0002-4795-2573
Moises Exposito-AlonsoDepartment of Plant Biology, Carnegie Institution for Science, Stanford, United States.ORCID 0000-0001-5711-0700
Stefania GiacomelloSciLifeLab, KTH Royal Institute of Technology, Solna, Sweden.ORCID 0000-0003-0738-1574
Fabio Gomez-CanoDepartment of Biochemistry and Molecular Biology, Michigan State University, East Lansing, United States.ORCID 0000-0002-2624-0112
Kerstin KaufmannDepartment for Plant Cell and Molecular Biology, Institute for Biology, Humboldt-Universitaet zu Berlin, Berlin, Germany.ORCID 0000-0001-7960-6256
Dae Kwan KoGreat Lakes Bioenergy Research Center, Michigan State University, East Lansing, United States.ORCID 0000-0002-9720-5138
Sagar KumarDepartment of Plant Breeding & Genetics, Mata Gujri College, Fatehgarh Sahib, Punjabi University, Patiala, India.ORCID 0000-0002-0725-0059
Andrey V MalkovskiyDepartment of Plant Biology, Carnegie Institution for Science, Stanford, United States.ORCID 0000-0002-5648-8602
Naomi NakayamaDepartment of Bioengineering, Imperial College London, London, United Kingdom.
Toshihiro ObataDepartment of Biochemistry, University of Nebraska-Lincoln, Madison, United States.ORCID 0000-0001-8931-7722
Marisa S OteguiDepartment of Botany, University of Wisconsin-Madison, Madison, United States.ORCID 0000-0003-4699-6950
Gergo PalfalviDivision of Evolutionary Biology, National Institute for Basic Biology, Okazaki, Japan.
Elsa H Quezada-RodríguezCiencias Agrogenómicas, Escuela Nacional de Estudios Superiores Unidad León, Universidad Nacional Autónoma de México, León, Mexico.ORCID 0000-0001-7789-4987
Rajveer SinghSchool of Agricultural Biotechnology, Punjab Agricultural University, Ludhiana, India.ORCID 0000-0002-2922-1371
R Glen UhrigDepartment of Science, University of Alberta, Edmonton, Canada.ORCID 0000-0003-2773-4381
Jamie WaeseDepartment of Cell and Systems Biology/Centre for the Analysis of Genome Evolution and Function, University of Toronto, Toronto, Canada.ORCID 0000-0001-8783-9914
Klaas Van WijkSchool of Integrated Plant Science, Plant Biology Section, Cornell University, Ithaca, United States.ORCID 0000-0001-9536-0487
R Clay WrightDepartment of Biological Systems Engineering, Virginia Tech, Blacksburg, United States.
David W EhrhardtDepartment of Plant Biology, Carnegie Institution for Science, Stanford, United States.
Kenneth D BirnbaumCenter for Genomics and Systems Biology, New York University, New York, United States.
Seung Y RheeDepartment of Plant Biology, Carnegie Institution for Science, Stanford, United States.ORCID 0000-0002-7572-4762

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

With growing populations and pressing environmental problems, future economies will be increasingly plant-based. Now is the time to reimagine plant science as a critical component of fundamental science, agriculture, environmental stewardship, energy, technology and healthcare. This effort requires a conceptual and technological framework to identify and map all cell types, and to comprehensively annotate the localization and organization of molecules at cellular and tissue levels. This framework, called the Plant Cell Atlas (PCA), will be critical for understanding and engineering plant development, physiology and environmental responses. A workshop was convened to discuss the purpose and utility of such an initiative, resulting in a roadmap that acknowledges the current knowledge gaps and technical challenges, and underscores how the PCA initiative can help to overcome them.

Indexed as

Plant CellsAgricultureChlamydomonas reinhardtiiChloroplastsComputational BiologyImage Processing, Computer-AssistedPlant DevelopmentPlantsZea mays4D imagingA. thalianacell biologychlamydomonas reinhardtiilocation-to-functionmaizePlant Cell Atlasscience forumsingle-cell omicstranslational research

Identifiers

PMID34491200
PMCPMC8423441

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.