Evidence map›Paper›PMID 34531323›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2021

Activation loop phosphorylation of a non-RD receptor kinase initiates plant innate immune signaling.

Kyle W Bender, Daniel Couto, Yasuhiro Kadota, Alberto P Macho, Jan Sklenar, Paul Derbyshire, Marta Bjornson, Thomas A DeFalco, Annalise Petriello, Maria Font Farre and 6 more

Open access · hybridAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
6.6field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 38 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. A conserved juxtamembrane motif in plant NFR5 receptors is essential for root nodule symbiosis.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Review
  12. Review
  13. Molecular evolution of theFrontiers in genetics · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 1 institution in 2 countries.

Kyle W BenderInstitute of Plant and Microbial Biology, Zurich-Basel Plant Science Center, University of Zurich, 8008 Zurich, Switzerland.ORCID 0000-0002-1805-8097
Daniel CoutoThe Sainsbury Laboratory, University of East Anglia, Norwich NR4 7UH, United Kingdom.
Yasuhiro KadotaThe Sainsbury Laboratory, University of East Anglia, Norwich NR4 7UH, United Kingdom.ORCID 0000-0002-4782-1418
Alberto P MachoThe Sainsbury Laboratory, University of East Anglia, Norwich NR4 7UH, United Kingdom.ORCID 0000-0001-9935-8026
Jan SklenarThe Sainsbury Laboratory, University of East Anglia, Norwich NR4 7UH, United Kingdom.ORCID 0000-0003-1858-2574
Paul DerbyshireThe Sainsbury Laboratory, University of East Anglia, Norwich NR4 7UH, United Kingdom.
Marta BjornsonInstitute of Plant and Microbial Biology, Zurich-Basel Plant Science Center, University of Zurich, 8008 Zurich, Switzerland.
Thomas A DeFalcoInstitute of Plant and Microbial Biology, Zurich-Basel Plant Science Center, University of Zurich, 8008 Zurich, Switzerland.ORCID 0000-0003-2897-1485
Annalise PetrielloThe Sainsbury Laboratory, University of East Anglia, Norwich NR4 7UH, United Kingdom.
Maria Font FarreThe Sainsbury Laboratory, University of East Anglia, Norwich NR4 7UH, United Kingdom.
Benjamin SchwessingerThe Sainsbury Laboratory, University of East Anglia, Norwich NR4 7UH, United Kingdom.
Vardis NtoukakisThe Sainsbury Laboratory, University of East Anglia, Norwich NR4 7UH, United Kingdom.ORCID 0000-0003-0069-6004
Lena StransfeldInstitute of Plant and Microbial Biology, Zurich-Basel Plant Science Center, University of Zurich, 8008 Zurich, Switzerland.
Alexandra M E JonesThe Sainsbury Laboratory, University of East Anglia, Norwich NR4 7UH, United Kingdom.ORCID 0000-0003-2571-8708
Frank L H MenkeThe Sainsbury Laboratory, University of East Anglia, Norwich NR4 7UH, United Kingdom.
Cyril ZipfelInstitute of Plant and Microbial Biology, Zurich-Basel Plant Science Center, University of Zurich, 8008 Zurich, Switzerland; cyril.zipfel@botinst.uzh.ch.ORCID 0000-0003-4935-8583
University of East Anglia · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Receptor kinases (RKs) are fundamental for extracellular sensing and regulate development and stress responses across kingdoms. In plants, leucine-rich repeat receptor kinases (LRR-RKs) are primarily peptide receptors that regulate responses to myriad internal and external stimuli. Phosphorylation of LRR-RK cytoplasmic domains is among the earliest responses following ligand perception, and reciprocal transphosphorylation between a receptor and its coreceptor is thought to activate the receptor complex. Originally proposed based on characterization of the brassinosteroid receptor, the prevalence of complex activation via reciprocal transphosphorylation across the plant RK family has not been tested. Using the LRR-RK ELONGATION FACTOR TU RECEPTOR (EFR) as a model, we set out to understand the steps critical for activating RK complexes. While the EFR cytoplasmic domain is an active protein kinase in vitro and is phosphorylated in a ligand-dependent manner in vivo, catalytically deficient EFR variants are functional in antibacterial immunity. These results reveal a noncatalytic role for EFR in triggering immune signaling and indicate that reciprocal transphoshorylation is not a ubiquitous requirement for LRR-RK complex activation. Rather, our analysis of EFR along with a detailed survey of the literature suggests a distinction between LRR-RKs with RD- versus non-RD protein kinase domains. Based on newly identified phosphorylation sites that regulate the activation state of the EFR complex in vivo, we propose that LRR-RK complexes containing a non-RD protein kinase may be regulated by phosphorylation-dependent conformational changes of the ligand-binding receptor, which could initiate signaling either allosterically or through driving the dissociation of negative regulators of the complex.

Indexed as

ArabidopsisArabidopsis ProteinsCell MembraneGene ExpressionImmunity, InnateLigandsPeptide Elongation Factor TuPhosphorylationPlant ImmunityPlants, Genetically ModifiedProtein BindingProtein DomainsProtein KinasesProtein Serine-Threonine KinasesReceptors, Pattern RecognitionSignal TransductionArabidopsis ProteinsEFR protein, ArabidopsisLigandsPeptide Elongation Factor TuProtein KinasesProtein Serine-Threonine KinasesReceptors, Pattern Recognitionphosphorylationreceptor kinasesignaling

Identifiers

PMID34531323
PMCPMC8463890
OpenAlexW3199339241

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.