Evidence map›Paper›PMID 34536327›Full record

ArticleDevelopmental dynamics : an official publication of the American Association of Anatomists2022

Anterior patterning genes induced by Zic1 are sensitive to retinoic acid and its metabolite, 4-oxo-RA.

Aditi Dubey, Jean-Pierre Saint-Jeannet

Open access · bronzeAbstract read
In one paragraph

Article in Developmental dynamics : an official publication of the American Association of Anatomists, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.2field-weighted citation impact, top 50% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 2 citations in OpenAlex.

  1. Tissue Rotation of theJournal of developmental biology · 2022
    Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 2 institutions in 1 country.

Aditi DubeyDepartment of Molecular Pathobiology, New York University, College of Dentistry, New York, New York, USA.
Jean-Pierre Saint-JeannetDepartment of Molecular Pathobiology, New York University, College of Dentistry, New York, New York, USA.ORCID 0000-0003-3259-2103
Alnylam Pharmaceuticals (United States) · USNew York University · US

Funding

Vaccine FacilityP30CA016087 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI MARK Reid PHILIPS · 1985 to 2026
$83.1M
Molecular control of cranial placode progenitor formationR01DE025806 · NIDCR · NEW YORK UNIVERSITY · PI SAINT-JEANNET, JEAN-PIERRE · 2016 to 2020
$2.0M
Local modulation of retinoic acid signaling in cranial placode formationF32DE027599 · NIDCR · NEW YORK UNIVERSITY · PI DUBEY, ADITI · 2018 to 2020
$193k
NCI NIH HHS P30 CA016087NIDCR NIH HHS F32 DE027599NIDCR NIH HHS R01 DE025806
6 · The paper itself

Abstract

backgroundDevelopment of paired sensory organs is a highly complex and coordinated process. These organs arise from ectodermal thickenings in the cephalic region known as cranial placodes. We have previously shown that Zic1 is a critical regulator for the formation of the pre-placodal region (PPR), the common territory for the development of all cranial placodes in Xenopus laevis.

resultsIn this study, we have analyzed a number of Zic1 targets for their expression during PPR patterning, as well as their regulation by retinoic acid (RA) and one of its major metabolites, 4-oxo-RA. Our findings show that anteriorly Zic1 regulates several transcription factors, Crx, Fezf2, Nkx3-1, and Xanf1 as well as a serine/threonine/tyrosine kinase, Pkdcc.2. These factors are all expressed in the vicinity of the PPR and as such are candidate regulators of placode formation downstream of Zic1. In addition to their differential regulation by RA, we find that 4-oxo-RA is also capable of modulating the expression of these genes, as well as a broad array of RA-regulated genes.

conclusionOur data highlight the complexity of retinoid-mediated regulation required for Zic1-activated anterior structure specification in Xenopus, and the potential physiological role of 4-oxo-RA in cranial placode development.

Indexed as

Gene Expression Regulation, DevelopmentalTretinoinAnimalsEctodermTranscription FactorsXenopus laevisXenopus ProteinsTranscription FactorsTretinoinXenopus ProteinsZic1 protein, Xenopuspatterningplacoderetinoic acidXenopus

Identifiers

PMID34536327
PMCPMC8891028
OpenAlexW3201643505

What Socratic holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.