Evidence map›Paper›PMID 34551964›Full record

ArticleJournal of immunology (Baltimore, Md. : 1950)2021

Evolution of Cytomegalovirus-Responsive T Cell Clonality following Solid Organ Transplantation.

Lauren E Higdon, Steven Schaffert, Huang Huang, Maria E Montez-Rath, Marc Lucia, Alokkumar Jha, Naresha Saligrama, Kenneth B Margulies, Olivia M Martinez, Mark M Davis and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in Journal of immunology (Baltimore, Md. : 1950), 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.5field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 12 citations in OpenAlex.

  1. Trial
  2. Article
  3. Article
  4. T-cell receptor sequencing reveals selected donor-reactive CD8American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons · 2024
    Article
  5. Dominant CD4Cell reports. Medicine · 2023
    Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 1 country.

Lauren E HigdonNephrology Division, Department of Medicine, Stanford University, Palo Alto, CA.ORCID 0000-0002-6470-6155
Steven SchaffertInstitute for Immunity, Transplantation and Infection, Stanford University, Stanford, CA.ORCID 0000-0001-8842-0218
Huang HuangDepartment of Microbiology and Immunology, Stanford University, Stanford CA.ORCID 0000-0002-8377-4823
Maria E Montez-RathNephrology Division, Department of Medicine, Stanford University, Palo Alto, CA.ORCID 0000-0001-5154-2182
Marc LuciaDepartment of Surgery, Stanford University, Stanford, CA.ORCID 0000-0003-1669-3385
Alokkumar JhaCardiovascular Institute, Stanford University, Stanford, CA.ORCID 0000-0002-8024-5854
Naresha SaligramaDepartment of Microbiology and Immunology, Stanford University, Stanford CA.ORCID 0000-0003-2526-7150
Kenneth B MarguliesCardiovascular Institute, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA.ORCID 0000-0002-8093-4465
Olivia M MartinezDepartment of Surgery, Stanford University, Stanford, CA.ORCID 0000-0002-2798-0251
Mark M DavisInstitute for Immunity, Transplantation and Infection, Stanford University, Stanford, CA.ORCID 0000-0001-6868-657X
Purvesh KhatriInstitute for Immunity, Transplantation and Infection, Stanford University, Stanford, CA.ORCID 0000-0002-4143-4708
Jonathan S MaltzmanNephrology Division, Department of Medicine, Stanford University, Palo Alto, CA; maltzman@stanford.edu.ORCID 0000-0001-5722-269X
Stanford University · USCardiovascular Institute of the South · USHoward Hughes Medical Institute · USVA Palo Alto Health Care System · US

Funding

Using a tonsil organoid system to probe conditions for the induction of protective antibody and T cell responses to influenza.U19AI057229 · NIAID · STANFORD UNIVERSITY · PI Mark Morris Davis · 2003 to 2026
$88.5M
Translational Incubator CoreU19AI109662 · NIAID · STANFORD UNIVERSITY · PI GLENN, JEFFREY S · 2014 to 2019
$28.6M
MOLECULAR &CELLULAR IMMUNOBIOLOGYT32AI007290 · NIAID · STANFORD UNIVERSITY · PI Sean Curtis Bendall, Olivia M Martinez · 1985 to 2026
$27.0M
Stanford Islet Research CoreP30DK116074 · NIDDK · STANFORD UNIVERSITY · PI Seung K Kim · 2017 to 2026
$19.5M
Giant MagnetoResistive (GMR) Sensors for Measuring Influenza VaccineR01AI125197 · NIAID · STANFORD UNIVERSITY · PI UTZ, PAUL JOSEPH, WANG, SHAN X. · 2016 to 2021
$5.0M
TRAINING PROGRAM IN ACADEMIC NEPHROLOGYT32DK007357 · NIDDK · STANFORD UNIVERSITY · PI CHERTOW, GLENN MATTHEW · 1986 to 2022
$4.8M
Contribution of CMV-specific T cells to chronic kidney rejectionK01DK123196 · NIDDK · STANFORD UNIVERSITY · PI HIGDON, LAUREN · 2020 to 2022
$344k
Immune control of chronic viral infection in solid organ transplantationI01CX001971 · VA · VETERANS ADMIN PALO ALTO HEALTH CARE SYS · PI JONATHAN S MALTZMAN · 2020 to 2026
–
CSRD VA I01 CX001971NIAID NIH HHS R01 AI125197NIAID NIH HHS T32 AI007290NIAID NIH HHS U19 AI057229NIAID NIH HHS U19 AI109662NIDDK NIH HHS K01 DK123196NIDDK NIH HHS P30 DK116074NIDDK NIH HHS T32 DK007357
6 · The paper itself

Abstract

CMV infection is a significant complication after solid organ transplantation. We used single cell TCR αβ sequencing to determine how memory inflation impacts clonality and diversity of the CMV-responsive CD8 and CD4 T cell repertoire in the first year after transplantation in human subjects. We observed CD8 T cell inflation but no changes in clonal diversity, indicating homeostatic stability in clones. In contrast, the CD4 repertoire was diverse and stable over time, with no evidence of CMV-responsive CD4 T cell expansion. We identified shared CDR3 TCR motifs among patients but no public CMV-specific TCRs. Temporal changes in clonality in response to transplantation and in the absence of detectable viral reactivation suggest changes in the repertoire immediately after transplantation followed by an expansion with stable clonal competition that may mediate protection.

Indexed as

Heart TransplantationKidney TransplantationAdultAgedAntigens, ViralCD4-Positive T-LymphocytesCD8-Positive T-LymphocytesCell ProliferationClone CellsCytomegalovirusCytomegalovirus InfectionsFemaleGenetic VariationGraft RejectionHumansImmunologic MemoryAntigens, ViralReceptors, Antigen, T-Cell, alpha-beta

Identifiers

PMID34551964
PMCPMC8492537
OpenAlexW3199004047

What Socratic holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.