Evidence map›Paper›PMID 34566985›Full record

ArticleFrontiers in immunology2021

Optimal Isolation Protocols for Examining and Interrogating Mononuclear Phagocytes From Human Intestinal Tissue.

Chloe M Doyle, Erica E Vine, Kirstie M Bertram, Heeva Baharlou, Jake W Rhodes, Suat Dervish, Martijn P Gosselink, Angelina Di Re, Geoffrey P Collins, Faizur Reza and 7 more

Open access · goldAbstract read
In one paragraph

Article in Frontiers in immunology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.7field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 10 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Identification of CX3CR1iScience · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 4 institutions in 1 country.

Chloe M DoyleCentre for Immunology and Allergy Research, The Westmead Institute for Medical Research, Westmead, NSW, Australia.
Erica E VineCentre for Virus Research, The Westmead Institute for Medical Research, Westmead, NSW, Australia.
Kirstie M BertramCentre for Virus Research, The Westmead Institute for Medical Research, Westmead, NSW, Australia.
Heeva BaharlouCentre for Virus Research, The Westmead Institute for Medical Research, Westmead, NSW, Australia.
Jake W RhodesCentre for Immunology and Allergy Research, The Westmead Institute for Medical Research, Westmead, NSW, Australia.
Suat DervishWestmead Cytometry, The Westmead Institute for Medical Research, Westmead, NSW, Australia.
Martijn P GosselinkCentre for Immunology and Allergy Research, The Westmead Institute for Medical Research, Westmead, NSW, Australia.
Angelina Di ReCentre for Immunology and Allergy Research, The Westmead Institute for Medical Research, Westmead, NSW, Australia.
Geoffrey P CollinsCentre for Immunology and Allergy Research, The Westmead Institute for Medical Research, Westmead, NSW, Australia.
Faizur RezaCentre for Immunology and Allergy Research, The Westmead Institute for Medical Research, Westmead, NSW, Australia.
James W T TohCentre for Immunology and Allergy Research, The Westmead Institute for Medical Research, Westmead, NSW, Australia.
Nimalan Pathma-NathanCentre for Immunology and Allergy Research, The Westmead Institute for Medical Research, Westmead, NSW, Australia.
Golo AhlenstielStorr Liver Centre, The Westmead Institute for Medical Research, Westmead, NSW, Australia.
Grahame CterctekoCentre for Immunology and Allergy Research, The Westmead Institute for Medical Research, Westmead, NSW, Australia.
Anthony L CunninghamCentre for Virus Research, The Westmead Institute for Medical Research, Westmead, NSW, Australia.
Andrew N HarmanCentre for Immunology and Allergy Research, The Westmead Institute for Medical Research, Westmead, NSW, Australia.
Scott N ByrneCentre for Immunology and Allergy Research, The Westmead Institute for Medical Research, Westmead, NSW, Australia.
Westmead Institute for Medical Research · AUThe University of Sydney · AUWestmead Hospital · AUWestern Sydney University · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The human intestine contains numerous mononuclear phagocytes (MNP), including subsets of conventional dendritic cells (cDC), macrophages (Mf) and monocytes, each playing their own unique role within the intestinal immune system and homeostasis. The ability to isolate and interrogate MNPs from fresh human tissue is crucial if we are to understand the role of these cells in homeostasis, disease settings and immunotherapies. However, liberating these cells from tissue is problematic as many of the key surface identification markers they express are susceptible to enzymatic cleavage and they are highly susceptible to cell death. In addition, the extraction process triggers immunological activation/maturation which alters their functional phenotype. Identifying the evolving, complex and highly heterogenous repertoire of MNPs by flow cytometry therefore requires careful selection of digestive enzyme blends that liberate viable cells and preserve recognition epitopes involving careful selection of antibody clones to enable analysis and sorting for functional assays. Here we describe a method for the anatomical separation of mucosa and submucosa as well as isolating lymphoid follicles from human jejunum, ileum and colon. We also describe in detail the optimised enzyme digestion methods needed to acquire functionally immature and biologically functional intestinal MNPs. A comprehensive list of screened antibody clones is also presented which allows for the development of high parameter flow cytometry panels to discriminate all currently identified human tissue MNP subsets including pDCs, cDC1, cDC2 (langerin

Indexed as

Cell SeparationFlow CytometryBiomarkersCells, CulturedColonCytokinesDendritic CellsHumansIleumIntestinal MucosaJejunumMacrophagesMonocytesPhagocytesPhenotypeBiomarkersCytokinesdendritic cells (DC)enzymatic digestionflow cytometryhuman tissueintestinemacrophage – cellmononuclear phagocyte cells (MNP)

Identifiers

PMID34566985
PMCPMC8462295
OpenAlexW3197574349

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.