Evidence map›Paper›PMID 34573430›Full record

ArticleGenes2021

Whole-Genome Profiles of Malay Colorectal Cancer Patients with Intact MMR Proteins.

Wan Khairunnisa Wan Juhari, Khairul Bariah Ahmad Amin Noordin, Andee Dzulkarnaen Zakaria, Wan Faiziah Wan Abdul Rahman, Wan Muhamad Mokhzani Wan Muhamad Mokhter, Muhammad Radzi Abu Hassan, Ahmad Shanwani Mohammed Sidek, Bin Alwi Zilfalil

Open access · goldAbstract read
In one paragraph

Article in Genes, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.8field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 13 citations in OpenAlex.

  1. Review
  2. Review
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  5. High-Throughput Sequencing Reveals ThatJournal of personalized medicine · 2023
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  6. Neoantigens: promising targets for cancer therapy.Signal transduction and targeted therapy · 2023
    Review
  7. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 1 country.

Wan Khairunnisa Wan JuhariHuman Genome Centre, School of Medical Sciences, Universiti Sains Malaysia, Kubang Kerian 16150, Kelantan, Malaysia.
Khairul Bariah Ahmad Amin NoordinSchool of Dental Sciences, Universiti Sains Malaysia, Kubang Kerian 16150, Kelantan, Malaysia.
Andee Dzulkarnaen ZakariaDepartment of Surgery, School of Medical Sciences, Universiti Sains Malaysia, Kubang Kerian 16150, Kelantan, Malaysia.ORCID 0000-0002-4826-9725
Wan Faiziah Wan Abdul RahmanDepartment of Pathology, School of Medical Sciences, Universiti Sains Malaysia, Kubang Kerian 16150, Kelantan, Malaysia.ORCID 0000-0001-9280-4257
Wan Muhamad Mokhzani Wan Muhamad MokhterDepartment of Surgery, School of Medical Sciences, Universiti Sains Malaysia, Kubang Kerian 16150, Kelantan, Malaysia.
Muhammad Radzi Abu HassanClinical Research Centre, Hospital Sultanah Bahiyah, Alor Star 05460, Kedah, Malaysia.
Ahmad Shanwani Mohammed SidekSurgery Department, Hospital Raja Perempuan Zainab II, Kota Bharu 15200, Kelantan, Malaysia.
Bin Alwi ZilfalilHuman Genome Centre, School of Medical Sciences, Universiti Sains Malaysia, Kubang Kerian 16150, Kelantan, Malaysia.
Universiti Sains Malaysia · MYHospital Raja Perempuan Zainab II · MYHospital Sultanah Bahiyah · MYHospital Universiti Sains Malaysia · MY

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThis study aimed to identify new genes associated with CRC in patients with normal mismatch repair (MMR) protein expression.

methodWhole-genome sequencing (WGS) was performed in seven early-age-onset Malay CRC patients. Potential germline genetic variants, including single-nucleotide variations and insertions and deletions (indels), were prioritized using functional and predictive algorithms.

resultsAn average of 3.2 million single-nucleotide variations (SNVs) and over 800 indels were identified. Three potential candidate variants in three genes-

conclusionThis study provides a new spectrum of insights into the potential genes, variants and pathways associated with CRC in Malay patients.

Indexed as

Colorectal NeoplasmsDNA Mismatch RepairGenetic Predisposition to DiseaseGenome, HumanHumansMalaysiaMutationProteinsWhole Genome SequencingProteinscolorectal cancerMalayolfactory signalling pathwaywhole-genome sequencing

Identifiers

PMID34573430
PMCPMC8471947
OpenAlexW3200349802

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.