Evidence map›Paper›PMID 34579648›Full record

ArticleBMC ecology and evolution2021

Phylodynamic and phylogeographic analysis of the complete genome of the West Nile virus lineage 2 (WNV-2) in the Mediterranean basin.

Haythem Srihi, Noureddine Chatti, Manel Ben Mhadheb, Jawhar Gharbi, Nabil Abid

Open access · goldAbstract read
In one paragraph

Article in BMC ecology and evolution, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
2.7field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. First Detection of West Nile Virus Lineage 2 inPathogens (Basel, Switzerland) · 2024
    Article
  11. Genomic epidemiology of West Nile virus in Europe.One health (Amsterdam, Netherlands) · 2024
    Review
  12. Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. Review
  18. One Health surveillance of West Nile and Usutu viruses: a repeated cross-sectional study exploring seroprevalence and endemicity in Southern France, 2016 to 2020.Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Haythem SrihiResearch Unit UR17ES30 "Genomics, Biotechnology and Antiviral Strategies", Higher Institute of Biotechnology of Monastir, University of Monastir, Tahar Hadded Avenue, PB 74, 5000, Monastir, Tunisia. srihi.haythem@gmail.com.
Noureddine ChattiResearch Unit UR17ES30 "Genomics, Biotechnology and Antiviral Strategies", Higher Institute of Biotechnology of Monastir, University of Monastir, Tahar Hadded Avenue, PB 74, 5000, Monastir, Tunisia.
Manel Ben MhadhebResearch Unit UR17ES30 "Genomics, Biotechnology and Antiviral Strategies", Higher Institute of Biotechnology of Monastir, University of Monastir, Tahar Hadded Avenue, PB 74, 5000, Monastir, Tunisia.
Jawhar Gharbi *Research Unit UR17ES30 "Genomics, Biotechnology and Antiviral Strategies", Higher Institute of Biotechnology of Monastir, University of Monastir, Tahar Hadded Avenue, PB 74, 5000, Monastir, Tunisia.
Nabil Abid *Laboratory of Transmissible Diseases and Biological Active Substances LR99ES27, Faculty of Pharmacy, University of Monastir, Ibn Sina Street, 5000, Monastir, Tunisia. nabil.abid@isbst.uma.tn.
University of Monastir · TNInstitut Supérieur des Études Technologiques en Communications de Tunis · TN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe West Nile virus is a highly contagious agent for a wide range of hosts. Its spread in the Mediterranean region raises several questions about its origin and the risk factors underlying the virus's dispersal. MATERIALS AND

methodsThe present study aims to reconstruct the temporal and spatial phylodynamics of West Nile virus lineage 2 in the Mediterranean region using 75 complete genome sequences from different host species retrieved from international databases.

resultsThis data set suggests that current strains of WNV-2 began spreading in South Africa or nearby regions in the early twentieth century, and it migrated northwards via at least one route crossing the Mediterranean to reach Hungary in the early 2000s, before spreading throughout Europe. Another introduction event, according to the data set collected and analyses performed, is inferred to have occurred in around 1978. Migratory birds constitute, among others, additional risk factors that enhance the geographical transmission of the infection.

conclusionOur data underline the importance of the spatial-temporal tracking of migratory birds and phylodynamic reconstruction in setting up an efficient surveillance system for emerging and reemerging zoonoses in the Mediterranean region.

Indexed as

West Nile FeverWest Nile virusAnimalsBirdsEuropePhylogeographyBayesian phylogeographyMigratory birdsSpatio temporal phylodynamicsWest Nile virus lineage 2

Identifiers

PMID34579648
PMCPMC8477494
OpenAlexW3203321201

What Socratic holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.