Evidence map›Paper›PMID 34583635›Full record

ArticleBMC genomics2021

Exploration of the lactation function of protein phosphorylation sites in goat mammary tissues by phosphoproteome analysis.

Chao Zhu, Junru Zhu, Quyu Duan, Yue Jiang, Hao Yin, Yonglong He, Fu Li, Xiao-Peng An

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.5field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 7 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Chao ZhuCollege of Animal Science and Technology, Northwest A&F University, No. 22 Xinong Road, Shaanxi, 712100, Yangling, People's Republic of China.
Junru ZhuCollege of Animal Science and Technology, Northwest A&F University, No. 22 Xinong Road, Shaanxi, 712100, Yangling, People's Republic of China.
Quyu DuanCollege of Animal Science and Technology, Northwest A&F University, No. 22 Xinong Road, Shaanxi, 712100, Yangling, People's Republic of China.
Yue JiangCollege of Animal Science and Technology, Northwest A&F University, No. 22 Xinong Road, Shaanxi, 712100, Yangling, People's Republic of China.
Hao YinCollege of Animal Science and Technology, Northwest A&F University, No. 22 Xinong Road, Shaanxi, 712100, Yangling, People's Republic of China.
Yonglong HeCollege of Animal Science and Technology, Northwest A&F University, No. 22 Xinong Road, Shaanxi, 712100, Yangling, People's Republic of China.
Fu LiCollege of Animal Science and Technology, Northwest A&F University, No. 22 Xinong Road, Shaanxi, 712100, Yangling, People's Republic of China.
Xiao-Peng AnCollege of Animal Science and Technology, Northwest A&F University, No. 22 Xinong Road, Shaanxi, 712100, Yangling, People's Republic of China. anxiaopengdky@163.com.
Northwest A&F University · CN

Funding

China Postdoctoral Science Foundation 2016T90954 and 2014M552498National Natural Science Foundation of China 31601925Shaanxi Science and Technology Innovation Project Plan 2017ZDXM-NY-081 and 2018ZDCXL-NY-01-04
6 · The paper itself

Abstract

backgroundProtein phosphorylation plays an important role in lactation. Differentially modified phosphorylation sites and phosphorylated proteins between peak lactation (PL, 90 days postpartum) and late lactation (LL, 280 days postpartum) were investigated using an integrated approach, namely, liquid chromatography with tandem mass spectrometry (LC-MS/MS) and tandem mass tag (TMT) labeling, to determine the molecular changes in the mammary tissues during the different stages of goat lactation.

resultsA total of 1,938 (1,111 upregulated, 827 downregulated) differentially modified phosphorylation sites of 1,172 proteins were identified (P values < 0.05 and fold change of phosphorylation ratios > 1.5). Multiple phosphorylation sites of FASN, ACACA, mTOR, PRKAA, IRS1, RPS6KB, EIF4EBP1, JUN, and TSC2 were different in PL compared with LL. In addition, the Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analysis showed that the calcium signaling pathway, oxytocin signaling pathway and MAPK signaling pathway were enriched. The western blot results showed that the phosphorylation levels of ACACA (Ser80), EIF4EBP1 (Thr46) and IRS1 (Ser312) increased and JUN (Ser63) decreased in PL compared with LL. These results were consistent with the phosphoproteome results.

conclusionsIn this study, we identified for the first time the differentially modified phosphorylation sites in goat mammary tissues between PL and LL. These results indicate that the multiple differentially modified phosphorylation sites of FASN, ACACA, mTOR, PRKAA, IRS1, RPS6KB, EIF4EBP1, TSC2, and JUN and proteins involved in the calcium signaling pathway, oxytocin signaling pathway, and MAPK signaling pathway are worthy of further exploration.

Indexed as

GoatsTandem Mass SpectrometryAnimalsChromatography, LiquidFemaleLactationMammary Glands, AnimalPhosphorylationGoatIRS1LactationPhosphoproteomeTriglyceridesβ-casein

Identifiers

PMID34583635
PMCPMC8479986
OpenAlexW3204066305

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.