Evidence map›Paper›PMID 34601701›Full record

ArticlePlant molecular biology2022

Arabidopsis PLDζ1 and PLDζ2 localize to post-Golgi membrane compartments in a partially overlapping manner.

Ryota Shimamura, Yohei Ohashi, Yukimi Yamamoto Taniguchi, Mariko Kato, Tomohiko Tsuge, Takashi Aoyama

Abstract read
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In one paragraph

Article in Plant molecular biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
1.1field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 7 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Ryota ShimamuraInstitute for Chemical Research, Kyoto University, Gokasho, Uji, Kyoto, 611-0011, Japan.
Yohei OhashiMRC Laboratory of Molecular Biology, University of Cambridge, Francis Crick Avenue, Cambridge Biomedical Campus, Cambridge, CB2 0QH, UK.
Yukimi Yamamoto TaniguchiInstitute for Chemical Research, Kyoto University, Gokasho, Uji, Kyoto, 611-0011, Japan.
Mariko KatoInstitute for Chemical Research, Kyoto University, Gokasho, Uji, Kyoto, 611-0011, Japan.
Tomohiko TsugeInstitute for Chemical Research, Kyoto University, Gokasho, Uji, Kyoto, 611-0011, Japan.
Takashi AoyamaInstitute for Chemical Research, Kyoto University, Gokasho, Uji, Kyoto, 611-0011, Japan. aoyama@scl.kyoto-u.ac.jp.ORCID http://orcid.org/0000-0002-4953-2572
Kyoto University · JPMRC Laboratory of Molecular Biology · GB

Funding

Institute for Chemical Research, Kyoto University 202064Japan Society for the Promotion of Science 16H04804
6 · The paper itself

Abstract

key messageArabidopsis PLDζ1 and PLDζ2 localize to the trans-Golgi network and to compartments including the trans-Golgi network, multi-vesicular bodies, and the tonoplast, respectively, depending on their N-terminal regions containing PX-PH domains. Phospholipase D (PLD) is involved in dynamic cellular processes, including membrane trafficking, cytoskeletal reorganization, and signal transduction for gene expression, through the production of phosphatidic acid in membrane compartments specific to each process. Although PLD plays crucial roles in various plant phenomena, the underlying processes involving PLD for each phenomenon remain largely elusive, partly because the subcellular localization of PLD remains obscure. In this study, we performed comparative subcellular localization analyses of the Arabidopsis thaliana PX-PH-PLDs PLDζ1 and PLDζ2. In mature lateral root cap cells, own promoter-driven fluorescence protein fusions of PLDζ1 localized to the entire trans-Golgi network (TGN) while that of PLDζ2 localized to punctate structures including part of the TGN and multi-vesicular bodies as well as the tonoplast. These localization patterns were reproduced using N-terminal partial proteins, which contain PX-PH domains. An inducibly overexpressed fluorescence protein fusion of the PLDζ2 partial protein first localized to punctate structures, and then accumulated predominantly on the tonoplast. Further domain dissection analysis revealed that the N-terminal moiety preceding the PX-PH domain of PLDζ2 was required for the tonoplast-predominant accumulation. These findings suggest that PLDζ1 and PLDζ2 play partially overlapping but nonetheless distinctive roles in post-Golgi compartments along the membrane trafficking pathway from the TGN to the tonoplast.

Indexed as

ArabidopsisArabidopsis ProteinsGolgi ApparatusGravitropismMicroscopy, ConfocalPhospholipase DPlant RootsPlants, Genetically ModifiedReal-Time Polymerase Chain ReactionArabidopsis ProteinsPhospholipase Dphospholipase Dzeta1, Arabidopsisphospholipase Dzeta2, ArabidopsisArabidopsis thalianaMultivesicular bodyPhospholipase DPX-PH domainTonoplastTrans-Golgi network

Identifiers

PMID34601701
OpenAlexW3204181135

What Socratic holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.