Evidence map›Paper›PMID 34609690›Full record

ArticleMolecular biology reports2021

Detection of whole genome selection signatures of Pakistani Teddy goat.

Rashid Saif, Jan Henkel, Tania Mahmood, Aniqa Ejaz, Fraz Ahmad, Saeeda Zia

Open access · hybridAbstract read
PubMed Publisher
In one paragraph

Article in Molecular biology reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
2.1field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 14 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Rashid SaifDecode Genomics, Punjab University Employees Housing Scheme, Lahore, Pakistan. rashid.saif37@gmail.com.ORCID http://orcid.org/0000-0001-8915-242X
Jan HenkelInstitute of Genetics, Vetsuisse Faculty, University of Bern, Bern, Switzerland.
Tania MahmoodDecode Genomics, Punjab University Employees Housing Scheme, Lahore, Pakistan.
Aniqa EjazDecode Genomics, Punjab University Employees Housing Scheme, Lahore, Pakistan.
Fraz AhmadDecode Genomics, Punjab University Employees Housing Scheme, Lahore, Pakistan.
Saeeda ZiaDepartment of Sciences and Humanities, National University of Computer and Emerging Sciences, Lahore, Pakistan.
University of the Punjab · PKNational University of Computer and Emerging Sciences · PKUniversity of Bern · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundNatural and artificial selection tend to cause variability that contributes to shape the genome of livestock in a way that differentiates them among the animal kingdom. The particular aim here is to identify positive selection signatures with whole genome pooled-sequence data of Pakistani Teddy goat. METHODS AND

resultsPaired-end alignment of 635,357,043 reads of Teddy goat with (ARS1) reference genome assembly was carried out. Pooled-Heterozygosity (Hp) and Tajima's D (TD) are applied for validation and getting better hits of selection signals, while pairwise F

conclusionsIn brief, this study identified the genes under selection in Pakistani Teddy goat that will be helpful to refining the marker-assisted breeding policies and converging required production traits within and across other goat breeds and to explore full genetic potential of this valued species of livestock.

Indexed as

GenomeWhole Genome SequencingAnimalsGenomicsGoatsHeterozygoteFSTHp statisticsPooled-seqSelection signaturesTDTeddy goat

Identifiers

PMID34609690
OpenAlexW3201678529

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.