Evidence map›Paper›PMID 34633869›Full record

ArticleJournal of bacteriology2022

Regulatory Small RNA Qrr2 Is Expressed Independently of Sigma Factor-54 and Can Function as the Sole Qrr Small RNA To Control Quorum Sensing in Vibrio parahaemolyticus.

J G Tague, J Hong, S S Kalburge, E F Boyd

Open access · greenAbstract read
In one paragraph

Article in Journal of bacteriology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
2.1field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 27 citations in OpenAlex.

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  16. The Regulatory Functions of σInternational journal of molecular sciences · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

J G TagueDepartment of Biological Sciences, University of Delawaregrid.33489.35, Newark, Delaware, USA.
J HongDepartment of Biological Sciences, University of Delawaregrid.33489.35, Newark, Delaware, USA.
S S KalburgeDepartment of Biological Sciences, University of Delawaregrid.33489.35, Newark, Delaware, USA.
E F BoydDepartment of Biological Sciences, University of Delawaregrid.33489.35, Newark, Delaware, USA.ORCID 0000-0001-7435-4897
University of Delaware · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Bacterial cells alter gene expression in response to changes in population density in a process called quorum sensing (QS). In Vibrio harveyi, LuxO, a low-cell-density activator of sigma factor-54 (RpoN), is required for transcription of five noncoding regulatory small RNAs (sRNAs), Qrr1 to Qrr5, which each repress translation of the master QS regulator, LuxR. Vibrio parahaemolyticus, the leading cause of bacterial seafoodborne gastroenteritis, also contains five Qrr sRNAs that control OpaR (the LuxR homolog), controlling capsule polysaccharide (CPS), motility, and metabolism. We show that in a Δ

Indexed as

Bacterial ProteinsDNA-Directed RNA PolymerasesGene Expression Regulation, BacterialMutationPhylogenyQuorum SensingRNA, BacterialRNA Polymerase Sigma 54Sigma FactorVibrio parahaemolyticusBacterial ProteinsDNA-Directed RNA PolymerasesRNA, BacterialRNA Polymerase Sigma 54RNA polymerase sigma 70Sigma Factorbiofilmnoncoding sRNAquorum sensingsigma-54sigma-70

Identifiers

PMID34633869
PMCPMC8765448
OpenAlexW3205035109

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.