Evidence map›Paper›PMID 34640372›Full record

ArticleJournal of clinical medicine2021

Application of an Exploratory Knowledge-Discovery Pipeline Based on Machine Learning to Multi-Scale OMICS Data to Characterise Myocardial Injury in a Cohort of Patients with Septic Shock: An Observational Study.

Bernardo Bollen Pinto, Vicent Ribas Ripoll, Paula Subías-Beltrán, Antoine Herpain, Cristina Barlassina, Eliandre Oliveira, Roberta Pastorelli, Daniele Braga, Matteo Barcella, Laia Subirats and 7 more

Open access · goldAbstract read
In one paragraph

Article in Journal of clinical medicine, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.5field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 7 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 8 institutions in 5 countries.

Bernardo Bollen PintoDepartment of Acute Medicine, Geneva University Hospitals, 1205 Geneva, Switzerland.ORCID 0000-0002-1281-543X
Vicent Ribas RipollUnit of Digital Health, Eurecat, Centre Tecnològic de Catalunya, 08290 Barcelona, Spain.
Paula Subías-BeltránUnit of Digital Health, Eurecat, Centre Tecnològic de Catalunya, 08290 Barcelona, Spain.ORCID 0000-0003-1167-1259
Antoine HerpainDepartment of Intensive Care, Erasme University Hospital-Université Libre de Bruxelles, 1070 Brussels, Belgium.ORCID 0000-0002-0981-0208
Cristina BarlassinaFondazione Filarete, 20139 Milan, Italy.
Eliandre OliveiraProteomics Platform, Parc Científic de Barcelona, 08028 Barcelona, Spain.
Roberta PastorelliIRCCS-Istituto di Ricerche Farmacologiche Mario Negri, 20156 Milan, Italy.
Daniele BragaFondazione Filarete, 20139 Milan, Italy.ORCID 0000-0003-2168-8425
Matteo BarcellaFondazione Filarete, 20139 Milan, Italy.
Laia SubiratsUnit of Digital Health, Eurecat, Centre Tecnològic de Catalunya, 08290 Barcelona, Spain.ORCID 0000-0001-8646-5463
Julia Bauzá-MartinezProteomics Platform, Parc Científic de Barcelona, 08028 Barcelona, Spain.
Antonia OdenaProteomics Platform, Parc Científic de Barcelona, 08028 Barcelona, Spain.
Manuela FerrarioDepartment of Electronics, Information and Bioengineering, Politecnico di Milano, 20133 Milano, Italy.ORCID 0000-0001-7371-3624
Giuseppe BaselliDepartment of Electronics, Information and Bioengineering, Politecnico di Milano, 20133 Milano, Italy.ORCID 0000-0003-2978-1704
Federico AlettiInstituto de Ciência e Tecnologia, Universidade Federal de São Paulo (UNIFESP), São Paulo 12231-280, Brazil.
Karim BendjelidDepartment of Acute Medicine, Geneva University Hospitals, 1205 Geneva, Switzerland.ORCID 0000-0002-7921-7207
On Behalf Of The Shockomics Consortium
Barcelona Biomedical Research Park · ESCentre Tecnologic de Telecomunicacions de Catalunya · ESUniversity of Milan · ITPolitecnico di Milano · ITUniversity Hospital of Geneva · CHMario Negri Institute for Pharmacological Research · ITUniversidade Federal de São Paulo · BRUniversité Libre de Bruxelles · BE

Funding

European Commission FP7 602706
6 · The paper itself

Abstract

Currently, there is no therapy targeting septic cardiomyopathy (SC), a key contributor to organ dysfunction in sepsis. In this study, we used a machine learning (ML) pipeline to explore transcriptomic, proteomic, and metabolomic data from patients with septic shock, and prospectively collected measurements of high-sensitive cardiac troponin and echocardiography. The purposes of the study were to suggest an exploratory methodology to identify and characterise the multiOMICs profile of (i) myocardial injury in patients with septic shock, and of (ii) cardiac dysfunction in patients with myocardial injury. The study included 27 adult patients admitted for septic shock. Peripheral blood samples for OMICS analysis and measurements of high-sensitive cardiac troponin T (hscTnT) were collected at two time points during the ICU stay. A ML-based study was designed and implemented to untangle the relations among the OMICS domains and the aforesaid biomarkers. The resulting ML pipeline consisted of two main experimental phases: recursive feature selection (FS) assessing the stability of biomarkers, and classification to characterise the multiOMICS profile of the target biomarkers. The application of a ML pipeline to circulate OMICS data in patients with septic shock has the potential to predict the risk of myocardial injury and the risk of cardiac dysfunction.

Indexed as

feature selectionmachine learningmyocardial injuryseptic cardiomyopathyseptic shock

Identifiers

PMID34640372
PMCPMC8509561
OpenAlexW3203690639

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.