Evidence map›Paper›PMID 34648530›Full record

SynthesisPloS one2021

Meta-Analysis illustrates possible role of lipopolysaccharide (LPS)-induced tissue injury in nasopharyngeal carcinoma (NPC) pathogenesis.

David Z Allen, Jihad Aljabban, Dustin Silverman, Sean McDermott, Ross A Wanner, Michael Rohr, Dexter Hadley, Maryam Panahiazar

Open access · goldAbstract readMeta-Analysis
In one paragraph

Synthesis in PloS one, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.3field-weighted citation impact, top 41% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 3 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 1 country.

David Z AllenThe Ohio State College of Medicine, Columbus, Ohio, United States of America.ORCID 0000-0002-6727-4378
Jihad AljabbanDepartment of Medicine, University of Wisconsin Hospital and Clinics, Madison, Wisconsin, United States of America.ORCID 0000-0003-4999-9372
Dustin SilvermanDepartment of Otolaryngology, The Ohio State Wexner Medical Center, Columbus, Ohio, United States of America.
Sean McDermottThe Ohio State College of Medicine, Columbus, Ohio, United States of America.
Ross A WannerThe Ohio State College of Medicine, Columbus, Ohio, United States of America.
Michael RohrUniversity of Central Florida, Orlando, Florida, United States of America.
Dexter HadleyDepartment of Pathology, University of Central Florida, Orlando, Florida, United States of America.
Maryam PanahiazarDepartment of Surgery, University of California San Francisco, San Francisco, California, United States of America.
Columbus State Community College · USUniversity of Central Florida · USThe Ohio State University Wexner Medical Center · USUniversity of California, San Francisco · USUW Health University Hospital · US

Funding

Crowd-Assisted Deep Learning (CrADLe) Digital Curation to Translate Big Data into Precision MedicineU01LM012675 · NLM · UNIVERSITY OF CENTRAL FLORIDA · PI HADLEY, DEXTER D · 2017 to 2020
$2.1M
Crowd-sourcing A STAR Functional Genomic Characterization of Cancer with Open Big DataUH2CA203792 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI HADLEY, DEXTER D · 2016 to 2017
$634k
The Role of Klotho Beta in Colorectal Cancer TumorigenesisF30CA257492 · NCI · UNIVERSITY OF CENTRAL FLORIDA · PI ROHR, MICHAEL W · 2021 to 2023
$97k
NCI NIH HHS F30 CA257492NCI NIH HHS UH2 CA203792NLM NIH HHS U01 LM012675
6 · The paper itself

Abstract

backgroundNasopharyngeal carcinoma (NPC) is a cancer of epithelial origin with a high incidence in certain populations. While NPC has a high remission rate with concomitant chemoradiation, recurrences are frequent, and the downstream morbidity of treatment is significant. Thus, it is imperative to find alternative therapies.

methodsWe employed a Search Tag Analyze Resource (STARGEO) platform to conduct a meta-analysis using the National Center for Biotechnology's (NCBI) Gene Expression Omnibus (GEO) to define NPC pathogenesis. We identified 111 tumor samples and 43 healthy nasopharyngeal epithelium samples from NPC public patient data. We analyzed associated signatures in Ingenuity Pathway Analysis (IPA), restricting genes that showed statistical significance (p<0.05) and an absolute experimental log ratio greater than 0.15 between disease and control samples.

resultsOur meta-analysis identified activation of lipopolysaccharide (LPS)-induced tissue injury in NPC tissue. Additionally, interleukin-1 (IL-1) and SB203580 were the top upstream regulators. Tumorigenesis-related genes such as homeobox A10 (HOXA10) and prostaglandin-endoperoxide synthase 2 (PTGS2 or COX-2) as well as those associated with extracellular matrix degradation, such as matrix metalloproteinases 1 and 3 (MMP-1, MMP-3) were also upregulated. Decreased expression of genes that encode proteins associated with maintaining healthy nasal respiratory epithelium structural integrity, including sentan-cilia apical structure protein (SNTN) and lactotransferrin (LTF) was documented. Importantly, we found that etanercept inhibits targets upregulated in NPC and LPS induction, such as MMP-1, PTGS2, and possibly MMP-3.

conclusionsOur analysis illustrates that nasal epithelial barrier dysregulation and maladaptive immune responses are key components of NPC pathogenesis along with LPS-induced tissue damage.

Indexed as

Cell Line, TumorDown-RegulationGene Expression Regulation, NeoplasticHumansLipopolysaccharidesMolecular Targeted TherapyNasopharyngeal CarcinomaSignal TransductionUp-RegulationLipopolysaccharides

Identifiers

PMID34648530
PMCPMC8516236
OpenAlexW3206261632

What Socratic holds

Textmetadata
LicenceCC0
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.