Evidence map›Paper›PMID 34689653›Full record

ArticleJournal of dental research2022

Genome-wide Gene-by-Sex Interaction Studies Identify Novel Nonsyndromic Orofacial Clefts Risk Locus.

W Awotoye, C Comnick, C Pendleton, E Zeng, A Alade, P A Mossey, L J J Gowans, M A Eshete, W L Adeyemo, T Naicker and 17 more

Open access · greenAbstract read
In one paragraph

Article in Journal of dental research, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed, 1 pooled it
1.9field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 1 synthesis or guideline pooled it, 22 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

27 authors at 11 institutions in 6 countries.

W AwotoyeIowa Institute for Oral Health Research, University of Iowa, Iowa City, IA, USA.ORCID 0000-0002-5223-6846
C ComnickDivision of Biostatistics and Computational Biology, College of Dentistry, University of Iowa, Iowa City, IA, USA.
C PendletonDivision of Biostatistics and Computational Biology, College of Dentistry, University of Iowa, Iowa City, IA, USA.
E ZengDivision of Biostatistics and Computational Biology, College of Dentistry, University of Iowa, Iowa City, IA, USA.
A AladeDepartment of Oral Pathology, Radiology and Medicine, College of Dentistry, University of Iowa, Iowa City, IA, USA.ORCID 0000-0001-9176-0221
P A MosseyDepartment of Orthodontics, University of Dundee, Dundee, UK.
L J J GowansKomfo Anokye Teaching Hospital and Kwame Nkrumah University of Science and Technology, Kumasi, Ghana.
M A EsheteDepartment of Surgery, School of Medicine, Addis Ababa University, Addis Ababa, Ethiopia.
W L AdeyemoDepartment of Oral and Maxillofacial Surgery, University of Lagos, Lagos, Nigeria.
T NaickerDepartment of Pediatrics, University of KwaZulu-Natal, Durban, South Africa.
C AdelekeDepartment of Oral Pathology, Radiology and Medicine, College of Dentistry, University of Iowa, Iowa City, IA, USA.
T BuschDepartment of Oral Pathology, Radiology and Medicine, College of Dentistry, University of Iowa, Iowa City, IA, USA.
M LiDepartment of Oral Pathology, Radiology and Medicine, College of Dentistry, University of Iowa, Iowa City, IA, USA.
A PetrinIowa Institute for Oral Health Research, University of Iowa, Iowa City, IA, USA.
J OlotuDepartment of Anatomy, University of Port Harcourt, Choba, Nigeria.
M HassanDepartment of Orthodontics, University of Dundee, Dundee, UK.
J PapeDepartment of Oral Pathology, Radiology and Medicine, College of Dentistry, University of Iowa, Iowa City, IA, USA.
S E MillerIowa Institute for Oral Health Research, University of Iowa, Iowa City, IA, USA.
P DonkorDepartment of Orthodontics, University of Dundee, Dundee, UK.
D AnandDepartment of Biological Sciences, University of Delaware, Newark, DE, USA.
S A LachkeDepartment of Biological Sciences, University of Delaware, Newark, DE, USA.
M L MarazitaCenter for Craniofacial and Dental Genetics, Departments of Oral Biology and Human Genetics, University of Pittsburgh, Pittsburgh, PA, USA.
A A AdeyemoNational Human Genomic Research Institute, Bethesda, MD, USA.
J C MurrayDepartment of Pediatrics, University of Iowa, Iowa City, IA, USA.ORCID 0000-0002-8214-6083
D AlbokhariMcKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University, Baltimore, MD, USA.
N SobreiraMcKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University, Baltimore, MD, USA.
A ButaliIowa Institute for Oral Health Research, University of Iowa, Iowa City, IA, USA.
University of Iowa · USUniversity of Dundee · GBJohns Hopkins University · USUniversity of Delaware · USAddis Ababa University · ETKomfo Anokye Teaching Hospital · GHNational Human Genome Research Institute · USUniversity of KwaZulu-Natal · ZAUniversity of Lagos · NGUniversity of Pittsburgh · USUniversity of Port Harcourt · NG

Funding

Whole Genome Sequencing for Orofacial Clefts, Incidental Findings and Role of Community GatekeepersR01DE028300 · NIDCR · UNIVERSITY OF IOWA · PI BUTALI, AZEEZ · 2020 to 2024
$3.9M
University of Iowa Institutional Training Program in Oral Health ResearchR90DE024296 · NIDCR · UNIVERSITY OF IOWA · PI STEVEN M. LEVY · 2013 to 2026
$1.8M
Genetic studies of nonsyndromic clefts in populations of African Descent.R00DE022378 · NIDCR · UNIVERSITY OF IOWA · PI BUTALI, AZEEZ · 2014 to 2016
$747k
Elucidating Cleft Etiology Employing Multiplex and Twin Families (ElCEEMuTF)K43DE029427 · NIDCR · KWAME NKRUMAH UNIVERSITY/SCIENCE/TECH · PI GOWANS, LORD JEPHTHAH JOOJO · 2019 to 2023
$529k
A web-based craniofacial disease gene discovery toolR03DE024776 · NIDCR · UNIVERSITY OF DELAWARE · PI LACHKE, SALIL · 2015 to 2016
$475k
Genetic studies of nonsyndromic clefts in populations of African Descent.K99DE022378 · NIDCR · UNIVERSITY OF IOWA · PI BUTALI, AZEEZ · 2012 to 2013
$252k
NIDCR NIH HHS K43 DE029427NIDCR NIH HHS K99 DE022378NIDCR NIH HHS R00 DE022378NIDCR NIH HHS R01 DE028300NIDCR NIH HHS R03 DE024776NIDCR NIH HHS R90 DE024296
6 · The paper itself

Abstract

Risk loci identified through genome-wide association studies have explained about 25% of the phenotypic variations in nonsyndromic orofacial clefts (nsOFCs) on the liability scale. Despite the notable sex differences in the incidences of the different cleft types, investigation of loci for sex-specific effects has been understudied. To explore the sex-specific effects in genetic etiology of nsOFCs, we conducted a genome-wide gene × sex (GxSex) interaction study in a sub-Saharan African orofacial cleft cohort. The sample included 1,019 nonsyndromic orofacial cleft cases (814 cleft lip with or without cleft palate and 205 cleft palate only) and 2,159 controls recruited from 3 sites (Ethiopia, Ghana, and Nigeria). An additive logistic model was used to examine the joint effects of the genotype and GxSex interaction. Furthermore, we examined loci with suggestive significance (

Indexed as

Cleft LipCleft PalateFemaleGenetic Predisposition to DiseaseGenome-Wide Association StudyHumansMalePolymorphism, Single Nucleotidebioinformaticscraniofacial anomaliescraniofacial biology/geneticsdevelopmental biologygender differencesgene expression

Identifiers

PMID34689653
PMCPMC8935575
OpenAlexW3209665002

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.