Evidence map›Paper›PMID 34739918›Full record

ArticleVirology2022

Discovery of novel fish papillomaviruses: From the Antarctic to the commercial fish market.

Simona Kraberger, Charlotte Austin, Kata Farkas, Thomas Desvignes, John H Postlethwait, Rafaela S Fontenele, Kara Schmidlin, Russell W Bradley, Pete Warzybok, Koenraad Van Doorslaer and 3 more

Open access · greenAbstract read
In one paragraph

Article in Virology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 26 citations in OpenAlex.

  1. Article
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  7. Characterization of Three Novel Papillomavirus Genomes in Vampire Bats (Animals : an open access journal from MDPI · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 9 institutions in 4 countries.

Simona KrabergerThe Biodesign Center for Fundamental and Applied Microbiomics, Center for Evolution and Medicine and School of Life Sciences, Arizona State University, Tempe, AZ, 85287, USA.
Charlotte AustinSchool of Biological Sciences, University of Canterbury, Christchurch, 8140, New Zealand.
Kata FarkasSchool of Natural Sciences, Bangor University, Bangor, LL57 2UW, UK.
Thomas DesvignesInstitute of Neuroscience, University of Oregon, Eugene, OR, 97403, USA.
John H PostlethwaitInstitute of Neuroscience, University of Oregon, Eugene, OR, 97403, USA.
Rafaela S FonteneleThe Biodesign Center for Fundamental and Applied Microbiomics, Center for Evolution and Medicine and School of Life Sciences, Arizona State University, Tempe, AZ, 85287, USA.
Kara SchmidlinThe Biodesign Center for Fundamental and Applied Microbiomics, Center for Evolution and Medicine and School of Life Sciences, Arizona State University, Tempe, AZ, 85287, USA.
Russell W BradleySanta Rosa Island Research Station, California State University Channel Islands, Camarillo, CA, 93012, USA.
Pete WarzybokPoint Blue Conservation Science, Petaluma, California, CA, 94954, USA.
Koenraad Van DoorslaerSchool of Animal and Comparative Biomedical Sciences, The BIO5 Institute; Department of Immunobiology; Cancer Biology Graduate Interdisciplinary Program; UA Cancer Center, University of Arizona, Tucson, AZ, 85724, USA.
William DavisonSchool of Natural Sciences, Bangor University, Bangor, LL57 2UW, UK.
Christopher B BuckLab of Cellular Oncology, National Cancer Institute, National Institutes of Health, Bethesda, MD, 20892, USA. Electronic address: buckc@mail.nih.gov.
Arvind VarsaniThe Biodesign Center for Fundamental and Applied Microbiomics, Center for Evolution and Medicine and School of Life Sciences, Arizona State University, Tempe, AZ, 85287, USA; Structural Biology Research Unit, Department of Integrative Biomedical Sciences, University of Cape Town, 7925, Cape Town, South Africa. Electronic address: arvind.varsani@asu.edu.
Arizona State University · USBangor University · GBUniversity of Oregon · USCalifornia State University, Channel Islands · USNational Institutes of Health · USPoint Blue Conservation Science · USUniversity of Arizona · USUniversity of Canterbury · NZUniversity of Cape Town · ZA

Funding

Molecular biology of human polyomavirusesZIABC011090 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI BUCK, CHRISTOPHER · 2009 to 2025
$9.3M
Papillomavirus Infectious EntryZIABC010907 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI BUCK, CHRISTOPHER · 2009 to 2011
$360k
Intramural NIH HHS ZIA BC010907
6 · The paper itself

Abstract

Fish papillomaviruses form a newly discovered group broadly recognized as the Secondpapillomavirinae subfamily. This study expands the documented genomes of the fish papillomaviruses from six to 16, including one from the Antarctic emerald notothen, seven from commercial market fishes, one from data mining of sea bream sequence data, and one from a western gull cloacal swab that is likely diet derived. The genomes of secondpapillomaviruses are ∼6 kilobasepairs (kb), which is substantially smaller than the ∼8 kb of terrestrial vertebrate papillomaviruses. Each genome encodes a clear homolog of the four canonical papillomavirus genes, E1, E2, L1, and L2. In addition, we identified open reading frames (ORFs) with short linear peptide motifs reminiscent of E6/E7 oncoproteins. Fish papillomaviruses are extremely diverse and phylogenetically distant from other papillomaviruses suggesting a model in which terrestrial vertebrate-infecting papillomaviruses arose after an evolutionary bottleneck event, possibly during the water-to-land transition.

Indexed as

AnimalsAntarctic RegionsBiological EvolutionCharadriiformesDNA, ViralFishesGenome, ViralHigh-Throughput Nucleotide SequencingOpen Reading FramesPapillomaviridaePapillomavirus E7 ProteinsPapillomavirus InfectionsPhylogenySequence Analysis, DNADNA, ViralPapillomavirus E7 ProteinsCentropristis striataLarus occidentalisMelanogrammus aeglefinusPapillomavirusSparus aurataTrematomus bernacchii

Identifiers

PMID34739918
PMCPMC8713439
OpenAlexW3209111992

What Socratic holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.