Evidence map›Paper›PMID 34742254›Full record

ArticleBMC genomics2021

Wheat transcriptome profiling reveals abscisic and gibberellic acid treatments regulate early-stage phytohormone defense signaling, cell wall fortification, and metabolic switches following Fusarium graminearum-challenge.

Leann M Buhrow, Ziying Liu, Dustin Cram, Tanya Sharma, Nora A Foroud, Youlian Pan, Michele C Loewen

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
4.2field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 27 citations in OpenAlex.

  1. Article
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  10. RNA-Seq Data Processing in Plant-Pathogen Interaction System: A Case Study.Methods in molecular biology (Clifton, N.J.) · 2023
    Article
  11. mSphere · 2022
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  12. Manipulating GA-Related Genes for Cereal Crop Improvement.International journal of molecular sciences · 2022
    Review
  13. Article
  14. BdGUCD1 and Cyclic GMP Are Required for Responses ofInternational journal of molecular sciences · 2022
    Article
  15. Linking Multi-Omics to Wheat Resistance Types toInternational journal of molecular sciences · 2022
    Review
  16. Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Leann M BuhrowNational Research Council of Canada, Aquatic and Crop Resources Development Research Centre, 110 Gymnasium Place, Saskatoon, SK, S7N 0M8, Canada.
Ziying LiuNational Research Council of Canada, Digital Technologies Research Centre, 1200 Montreal Road, Ottawa, ON, K1A 0R6, Canada.
Dustin CramNational Research Council of Canada, Aquatic and Crop Resources Development Research Centre, 110 Gymnasium Place, Saskatoon, SK, S7N 0M8, Canada.
Tanya SharmaUniversity of Ottawa, Department of Chemistry and Biomolecular Sciences, 150 Louis-Pasteur Pvt, Ottawa, ON, K1N 6N5, Canada.
Nora A ForoudAgriculture and Agri-food Canada, Lethbridge Research and Development Centre, 5403 1st Ave, Lethbridge, AB, T1J 4B1, Canada.
Youlian PanNational Research Council of Canada, Digital Technologies Research Centre, 1200 Montreal Road, Ottawa, ON, K1A 0R6, Canada. Youlian.Pan@nrc-cnrc.gc.ca.
Michele C LoewenNational Research Council of Canada, Aquatic and Crop Resources Development Research Centre, 110 Gymnasium Place, Saskatoon, SK, S7N 0M8, Canada. Michele.Loewen@nrc.ca.ORCID http://orcid.org/0000-0001-5053-9512
National Research Council Canada · CAUniversity of Ottawa · CAAgriculture and Agri-Food Canada · CA

Funding

National Research Council Canada 008237National Research Council Canada 011649
6 · The paper itself

Abstract

backgroundTreatment of wheat with the phytohormones abscisic acid (ABA) and gibberellic acid (GA) has been shown to affect Fusarium head blight (FHB) disease severity. However, the molecular mechanisms underlying the elicited phenotypes remain unclear. Toward addressing this gap in our knowledge, global transcriptomic profiling was applied to the FHB-susceptible wheat cultivar 'Fielder' to map the regulatory responses effected upon treatment with ABA, an ABA receptor antagonist (AS6), or GA in the presence or absence of Fusarium graminearum (Fg) challenge.

resultsSpike treatments resulted in a total of 30,876 differentially expressed genes (DEGs) identified in 'Fielder' (26,004) and the Fg (4872) pathogen. Topology overlap and correlation analyses defined 9689 wheat DEGs as Fg-related across the treatments. Further enrichment analyses demonstrated that these included expression changes within 'Fielder' defense responses, cell structural metabolism, molecular transport, and membrane/lipid metabolism. Dysregulation of ABA and GA crosstalk arising from repression of 'Fielder' FUS3 was noted. As well, expression of a putative Fg ABA-biosynthetic cytochrome P450 was detected. The co-applied condition of Fg + ABA elicited further up-regulation of phytohormone biosynthesis, as well as SA and ET signaling pathways and cell wall/polyphenolic metabolism. In contrast, co-applied Fg + GA mainly suppressed phytohormone biosynthesis and signaling, while modulating primary and secondary metabolism and flowering. Unexpectedly, co-applied Fg + AS6 did not affect ABA biosynthesis or signaling, but rather elicited antagonistic responses tied to stress, phytohormone transport, and FHB disease-related genes.

conclusionsObserved exacerbation (misregulation) of classical defense mechanisms and cell wall fortifications upon ABA treatment are consistent with its ability to promote FHB severity and its proposed role as a fungal effector. In contrast, GA was found to modulate primary and secondary metabolism, suggesting a general metabolic shift underlying its reduction in FHB severity. While AS6 did not antagonize traditional ABA pathways, its impact on host defense and Fg responses imply potential for future investigation. Overall, by comparing these findings to those previously reported for four additional plant genotypes, an additive model of the wheat-Fg interaction is proposed in the context of phytohormone responses.

Indexed as

FusariumCell WallDisease ResistanceGene Expression ProfilingGibberellinsPlant DiseasesPlant Growth RegulatorsTriticumgibberellic acidGibberellinsPlant Growth RegulatorsAbscisic acidDifferentially expressed genesFusarium graminearumFusarium head blightGibberellic acidPhytohormoneRNA-seqTriticum aestivumWheat

Identifiers

PMID34742254
PMCPMC8571860
OpenAlexW3212638599

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.