Evidence map›Paper›PMID 34828448›Full record

ArticleGenes2021

Poking COVID-19: Insights on Genomic Constraints among Immune-Related Genes between Qatari and Italian Populations.

Hamdi Mbarek, Massimiliano Cocca, Yasser Al-Sarraj, Chadi Saad, Massimo Mezzavilla, Wadha AlMuftah, Dario Cocciadiferro, Antonio Novelli, Isabella Quinti, Azza AlTawashi and 4 more

Open access · goldAbstract read
In one paragraph

Article in Genes, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.2field-weighted citation impact, top 45% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 3 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 5 institutions in 2 countries.

Hamdi MbarekQatar Genome Program, Qatar Foundation Research, Development and Innovation, Qatar Foundation, Doha P.O. Box 5825, Qatar.ORCID 0000-0002-1108-0371
Massimiliano CoccaInstitute for Maternal and Child Health, IRCCS 'Burlo Garofolo', 34137 Trieste, Italy.ORCID 0000-0002-1127-7596
Yasser Al-SarrajQatar Genome Program, Qatar Foundation Research, Development and Innovation, Qatar Foundation, Doha P.O. Box 5825, Qatar.ORCID 0000-0002-1505-6360
Chadi SaadQatar Genome Program, Qatar Foundation Research, Development and Innovation, Qatar Foundation, Doha P.O. Box 5825, Qatar.ORCID 0000-0001-6963-9126
Massimo MezzavillaInstitute for Maternal and Child Health, IRCCS 'Burlo Garofolo', 34137 Trieste, Italy.ORCID 0000-0002-9000-4595
Wadha AlMuftahQatar Genome Program, Qatar Foundation Research, Development and Innovation, Qatar Foundation, Doha P.O. Box 5825, Qatar.ORCID 0000-0003-2549-082X
Dario CocciadiferroTranslational Cytogenomics Research Unit, Bambino Gesù Children's Hospital, IRCCS, 00165 Rome, Italy.
Antonio NovelliTranslational Cytogenomics Research Unit, Bambino Gesù Children's Hospital, IRCCS, 00165 Rome, Italy.ORCID 0000-0002-9037-4297
Isabella QuintiDepartment of Molecular Medicine, Sapienza University of Rome, 00185 Rome, Italy.
Azza AlTawashiVP RDI Office, Qatar Foundation Research, Development and Innovation, Qatar Foundation, Doha P.O. Box 5825, Qatar.
Salvino SalvaggioVP RDI Office, Qatar Foundation Research, Development and Innovation, Qatar Foundation, Doha P.O. Box 5825, Qatar.
Asma AlThaniQatar Genome Program, Qatar Foundation Research, Development and Innovation, Qatar Foundation, Doha P.O. Box 5825, Qatar.
Giuseppe NovelliDepartment of Biomedicine and Prevention, Tor Vergata University of Rome, 00133 Rome, Italy.ORCID 0000-0002-7781-602X
Said I IsmailQatar Genome Program, Qatar Foundation Research, Development and Innovation, Qatar Foundation, Doha P.O. Box 5825, Qatar.ORCID 0000-0002-8425-4010
Qatar Foundation · QABambino Gesù Children's Hospital · ITIRCCS Materno Infantile Burlo Garofolo · ITSapienza University of Rome · ITUniversity of Rome Tor Vergata · IT

Funding

Institute for Maternal and Child Health, IRCCS "Burlo Garofolo" 5X1000 fundingRegione Lazio Italy, Progetti di Gruppi di Ricerca 2020 A0375-2020-36663 GecoBiomarkRome Foundation Italy, Prot 317A/I
6 · The paper itself

Abstract

Host genomic information, specifically genomic variations, may characterize susceptibility to disease and identify people with a higher risk of harm, leading to better targeting of care and vaccination. Italy was the epicentre for the spread of COVID-19 in Europe, the first country to go into a national lockdown and has one of the highest COVID-19 associated mortality rates. Qatar, on the other hand has a very low mortality rate. In this study, we compared whole-genome sequencing data of 14398 adults and Qatari-national to 925 Italian individuals. We also included in the comparison whole-exome sequence data from 189 Italian laboratory-confirmed COVID-19 cases. We focused our study on a curated list of 3619 candidate genes involved in innate immunity and host-pathogen interaction. Two population-gene metric scores, the Delta Singleton-Cohort variant score (DSC) and Sum Singleton-Cohort variant score (SSC), were applied to estimate the presence of selective constraints in the Qatari population and in the Italian cohorts. Results based on DSC and SSC metrics demonstrated a different selective pressure on three genes (MUC5AC, ABCA7, FLNA) between Qatari and Italian populations. This study highlighted the genetic differences between Qatari and Italian populations and identified a subset of genes involved in innate immunity and host-pathogen interaction.

Indexed as

AdultAllelesCommunicable Disease ControlCOVID-19Disease SusceptibilityExomeExome SequencingFemaleGene FrequencyGenetic Predisposition to DiseaseGenetics, PopulationGenomicsHost Microbial InteractionsHumansImmunity, InnateItalyCOVID-19COVID-19 severitygenetic constraintspopulation genetics

Identifiers

PMID34828448
PMCPMC8623290
OpenAlexW3216051700

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.