Evidence map›Paper›PMID 34842194›Full record

ArticleJournal of Parkinson's disease2022

Stochastic Epigenetic Mutations Influence Parkinson's Disease Risk, Progression, and Mortality.

Gary K Chen, Qi Yan, Kimberly C Paul, Cynthia D J Kusters, Aline Duarte Folle, Melissa Furlong, Adrienne Keener, Jeff Bronstein, Steve Horvath, Beate Ritz

Abstract read
In one paragraph

Article in Journal of Parkinson's disease, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Article
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  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Integrated regulation of dopaminergic and epigenetic effectors of neuroprotection in Parkinson's disease models.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Gary K ChenIndependent Researcher.
Qi YanDepartment of Epidemiology, UCLA Fielding School of Public Health, Los Angeles, CA, USA.
Kimberly C PaulDepartment of Neurology, David Geffen School of Medicine, Los Angeles, CA, USA.
Cynthia D J KustersDepartment of Human Genetics, David Geffen School of Medicine, University of California Los Angeles, Los Angeles, CA, USA.
Aline Duarte FolleDepartment of Epidemiology, UCLA Fielding School of Public Health, Los Angeles, CA, USA.
Melissa FurlongDepartment of Community, Environment and Policy, University of Arizona Mel and Enid Zuckerman College of Public Health, Tucson, AZ, USA.
Adrienne KeenerDepartment of Neurology, David Geffen School of Medicine, Los Angeles, CA, USA.
Jeff BronsteinDepartment of Neurology, David Geffen School of Medicine, Los Angeles, CA, USA.
Steve HorvathDepartment of Human Genetics, David Geffen School of Medicine, University of California Los Angeles, Los Angeles, CA, USA.
Beate RitzDepartment of Epidemiology, UCLA Fielding School of Public Health, Los Angeles, CA, USA.

Funding

Center for Gene-Environment Studies in Parkinson DiseaseU54ES012078 · NIEHS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI CHESSELET, MARIE-FRANCOISE S · 2002 to 2006
$7.1M
PARKINSON'S DISEASES SUSCEPTIBILITY GENES AND PESTICIDESR01ES010544 · NIEHS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI RITZ, BEATE R. · 2000 to 2015
$5.7M
Microbiome, Pesticides and Parkinsons in LatinosR01ES031106 · NIEHS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI RITZ, BEATE R. · 2020 to 2025
$3.8M
Prenatal Exposure to Pesticide Mixtures and Childhood ADHDR00ES028743 · NIEHS · UNIVERSITY OF ARIZONA · PI FURLONG, MELISSA · 2020 to 2022
$747k
Immune System Aging in Parkinson’s and Alzheimer’s disease: Epigenetics, biologic aging, and heightened immune states in a population-based studyK01AG072044 · NIA · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI PAUL, KIMBERLY · 2021 to 2025
$717k
Environment, Metabolomics, and PDR21ES030175 · NIEHS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI RITZ, BEATE R. · 2019 to 2020
$443k
Environmental exposure, DNA methylation, and Parkinson's diseaseR21ES024356 · NIEHS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI HORVATH, STEVE, RITZ, BEATE R. · 2014 to 2015
$424k
NIA NIH HHS K01 AG072044NIEHS NIH HHS R00 ES028743NIEHS NIH HHS R01 ES010544NIEHS NIH HHS R01 ES031106NIEHS NIH HHS R21 ES024356NIEHS NIH HHS R21 ES030175NIEHS NIH HHS U54 ES012078
6 · The paper itself

Abstract

backgroundStochastic epigenetic mutations (SEM) reflect a deviation from normal site-specific methylation patterns. Epigenetic mutation load (EML) captures the accumulation of SEMs across an individual's genome and may reflect dysfunction of the epigenetic maintenance system in response to epigenetic challenges.

objectiveWe investigate whether EML is associated with PD risk and time to events (i.e., death and motor symptom decline).

methodsWe employed logistic regression and Cox proportional hazards regression to assess the association between EML and several outcomes. Our analyses are based on 568 PD patients and 238 controls from the Parkinson's disease, Environment and Genes (PEG) study, for whom blood-based methylation data was available.

resultsWe found an association for PD onset and EML in all genes (OR = 1.90; 95%CI 1.52-2.37) and PD-related genes (OR = 1.87; 95%CI 1.50-2.32). EML was also associated with time to a minimum score of 35 points on the motor UPDRS exam (OR = 1.28; 95%CI 1.06-1.56) and time to death (OR = 1.29, 95%CI 1.11-1.49). An analysis of PD related genes only revealed five intragenic hotspots of high SEM density associated with PD risk.

conclusionOur findings suggest an enrichment of methylation dysregulation in PD patients in general and specifically in five PD related genes. EML may also be associated with time to death and motor symptom progression in PD patients.

Indexed as

Parkinson DiseaseDisease ProgressionEpigenesis, GeneticHumansMutationepigeneticsParkinson’s disease

Identifiers

PMID34842194
PMCPMC9076404

What Socratic holds

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LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.