Evidence map›Paper›PMID 34845015›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2021

Structure-function analysis of the nsp14 N7-guanine methyltransferase reveals an essential role in

Natacha S Ogando, Priscila El Kazzi, Jessika C Zevenhoven-Dobbe, Brenda W Bontes, Alice Decombe, Clara C Posthuma, Volker Thiel, Bruno Canard, François Ferron, Etienne Decroly and 1 more

Open access · hybridAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed, 1 pooled it
2.3field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 1 synthesis or guideline pooled it, 54 citations in OpenAlex.

  1. Pooled it
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  10. Au(I)-based compounds inhibit nsp14/nsp10 and nsp13 (helicase) to exert anti-SARS-CoV-2 properties.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2025
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  15. MAb Targeting a Link Between ExoN and MTase of TGEV NSP14.Monoclonal antibodies in immunodiagnosis and immunotherapy · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 3 countries.

Natacha S OgandoDepartment of Medical Microbiology, Leiden University Medical Center 2333 ZA Leiden, The Netherlands.ORCID 0000-0002-3577-4909
Priscila El KazziArchitecture et Fonction des Macromolécules Biologiques, Centre National de la Recherche Scientifique, Aix-Marseille Université 13288 Marseille, France.ORCID 0000-0001-5910-1381
Jessika C Zevenhoven-DobbeDepartment of Medical Microbiology, Leiden University Medical Center 2333 ZA Leiden, The Netherlands.
Brenda W BontesDepartment of Medical Microbiology, Leiden University Medical Center 2333 ZA Leiden, The Netherlands.ORCID 0000-0003-1520-2265
Alice DecombeArchitecture et Fonction des Macromolécules Biologiques, Centre National de la Recherche Scientifique, Aix-Marseille Université 13288 Marseille, France.ORCID 0000-0003-2422-2655
Clara C PosthumaDepartment of Medical Microbiology, Leiden University Medical Center 2333 ZA Leiden, The Netherlands.
Volker ThielInstitute of Virology and Immunology (IVI) 3350 Bern, Switzerland.
Bruno CanardArchitecture et Fonction des Macromolécules Biologiques, Centre National de la Recherche Scientifique, Aix-Marseille Université 13288 Marseille, France.
François FerronArchitecture et Fonction des Macromolécules Biologiques, Centre National de la Recherche Scientifique, Aix-Marseille Université 13288 Marseille, France.ORCID 0000-0002-8351-4992
Etienne DecrolyArchitecture et Fonction des Macromolécules Biologiques, Centre National de la Recherche Scientifique, Aix-Marseille Université 13288 Marseille, France; E.J.Snijder@lumc.nl Etienne.decroly@univ-amu.fr.ORCID 0000-0002-6046-024X
Eric J SnijderDepartment of Medical Microbiology, Leiden University Medical Center 2333 ZA Leiden, The Netherlands; E.J.Snijder@lumc.nl Etienne.decroly@univ-amu.fr.ORCID 0000-0003-3297-2309
Aix-Marseille Université · FRLeiden University Medical Center · NLUniversity of Bern · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

As coronaviruses (CoVs) replicate in the host cell cytoplasm, they rely on their own capping machinery to ensure the efficient translation of their messenger RNAs (mRNAs), protect them from degradation by cellular 5' exoribonucleases (ExoNs), and escape innate immune sensing. The CoV nonstructural protein 14 (nsp14) is a bifunctional replicase subunit harboring an N-terminal 3'-to-5' ExoN domain and a C-terminal (N7-guanine)-methyltransferase (N7-MTase) domain that is presumably involved in viral mRNA capping. Here, we aimed to integrate structural, biochemical, and virological data to assess the importance of conserved N7-MTase residues for nsp14's enzymatic activities and virus viability. We revisited the crystal structure of severe acute respiratory syndrome (SARS)-CoV nsp14 to perform an in silico comparative analysis between betacoronaviruses. We identified several residues likely involved in the formation of the N7-MTase catalytic pocket, which presents a fold distinct from the Rossmann fold observed in most known MTases. Next, for SARS-CoV and Middle East respiratory syndrome CoV, site-directed mutagenesis of selected residues was used to assess their importance for in vitro enzymatic activity. Most of the engineered mutations abolished N7-MTase activity, while not affecting nsp14-ExoN activity. Upon reverse engineering of these mutations into different betacoronavirus genomes, we identified two substitutions (R310A and F426A in SARS-CoV nsp14) abrogating virus viability and one mutation (H424A) yielding a crippled phenotype across all viruses tested. Our results identify the N7-MTase as a critical enzyme for betacoronavirus replication and define key residues of its catalytic pocket that can be targeted to design inhibitors with a potential pan-coronaviral activity spectrum.

Indexed as

Models, MolecularProtein ConformationAmino Acid SequenceBase SequenceBinding SitesCatalytic DomainConserved SequenceExoribonucleasesMicrobial ViabilityNucleotide MotifsRNA-Binding ProteinsRNA, ViralStructure-Activity RelationshipViral Nonstructural ProteinsVirus ReplicationExoribonucleasesnsp14 protein, SARS coronavirusRNA-Binding ProteinsRNA, ViralViral Nonstructural ProteinsMERS-CoVmRNA cappingRNA synthesisSARS-CoVSARS-CoV-2

Identifiers

PMID34845015
PMCPMC8670481
OpenAlexW3216647546

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.