Evidence map›Paper›PMID 34858488›Full record

ArticleFrontiers in genetics2021

A Novel Mutation of the KLK6 Gene in a Family With Knee Osteoarthritis.

Yanzhi Ge, Chenfen Zhou, Xiujuan Xiao, Zhijiang Jin, Li Zhou, Zuxiang Chen, Fucun Liu, Qiang Yuan, Guoqing Zhang, Letian Shan and 1 more

Open access · goldAbstract read
In one paragraph

Article in Frontiers in genetics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.7field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 7 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 1 country.

Yanzhi GeThe First Affiliated Hospital, Zhejiang Chinese Medical University, Hangzhou, China.
Chenfen ZhouNational Genomics Data Center, CAS Key Laboratory of Computational Biology, Bio-Med Big Data Center, Shanghai Institute of Nutrition and Health, University of Chinese Academy of Sciences, Chinese Academy of Sciences, Shanghai, China.
Xiujuan XiaoCollege of Pharmaceutical Sciences, Zhejiang Chinese Medical University, Hangzhou, China.
Zhijiang JinDepartment of Orthopaedics, The 9th People's Hospital of Hangzhou, Hangzhou, China.
Li ZhouThe First Affiliated Hospital, Zhejiang Chinese Medical University, Hangzhou, China.
Zuxiang ChenThe First Affiliated Hospital, Zhejiang Chinese Medical University, Hangzhou, China.
Fucun LiuDepartment of Orthopaedics, Changzheng Hospital, Second Military Medical University, Shanghai, China.
Qiang YuanCollege of Pharmaceutical Sciences, Zhejiang Chinese Medical University, Hangzhou, China.
Guoqing ZhangNational Genomics Data Center, CAS Key Laboratory of Computational Biology, Bio-Med Big Data Center, Shanghai Institute of Nutrition and Health, University of Chinese Academy of Sciences, Chinese Academy of Sciences, Shanghai, China.
Letian ShanThe First Affiliated Hospital, Zhejiang Chinese Medical University, Hangzhou, China.
Peijian TongThe First Affiliated Hospital, Zhejiang Chinese Medical University, Hangzhou, China.
Zhejiang Chinese Medical University · CNChinese Academy of Sciences · CNSecond Military Medical University · CNThird People's Hospital of Hangzhou · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

To investigate the correlation between gene mutation and knee osteoarthritis (KOA), a whole-exome sequencing (WES) was applied to analyze blood samples of four KOA patients and two normal subjects in a family. Gene mutations were identified by gene-trapping and high-throughput sequencing analysis across the differences between the patients and normal subjects. The interactive gene network analysis on the retrieval of interacting genes (STRING) database and the KOA-related genes expression data sets was performed. A possibly detrimental and nonsynonymous mutation at the kallikrein-related peptidase 6 (KLK6) gene (rs201586262, c. C80A, P27H) was identified and attracted our attention. KLK6 belongs to the kallikrein family of serine proteases and its serum level is known as a prevalent biomarker in inflammatory and malignant diseases. KLK6 expresses in the extracellular compartment for matrix degradation, highlighting that KLK6 plays a role in the pathogenesis of KOA. By using the gene databases, the KOA-related genes were mined after de-duplication and IL6 was selected as the most relevant gene through interactive analysis of protein-protein interaction (PPI) network. The data suggested that KLK6 gene mutation and the related expression alteration of IL6 gene might determine the occurrence of hereditary KOA. The is the first study discovering the gene mutation of KLK6 as a factor of pathogenesis of KOA, especially the hereditary KOA.

Indexed as

IL6KLK6knee osteoarthritismutationwhole-exome sequencing

Identifiers

PMID34858488
PMCPMC8631809
OpenAlexW3214153911

What Socratic holds

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.