Evidence map›Paper›PMID 34859120›Full record

ArticleBio-protocol2021

Lentivirus-mediated Conditional Gene Expression.

Leah Rommereim, Ajay Suresh Akhade, Ronald N Germain, Iain D C Fraser, Naeha Subramanian

Open access · greenAbstract read
In one paragraph

Article in Bio-protocol, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
0.2field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 1 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Leah RommereimInstitute for Systems Biology, Seattle, USA.
Ajay Suresh AkhadeInstitute for Systems Biology, Seattle, USA.
Ronald N GermainLaboratory of Immune System Biology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD 20692-0421, USA.
Iain D C FraserLaboratory of Immune System Biology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD 20692-0421, USA.
Naeha SubramanianInstitute for Systems Biology, Seattle, USA.
Institute for Systems Biology · US

Funding

NLRP3 inflammasome activation and its crosstalk with RLR signaling at the mitochondriaR01AI163131 · NIAID · INSTITUTE FOR SYSTEMS BIOLOGY · PI SUBRAMANIAN, NAEHA · 2021 to 2025
$2.3M
Can a modest change in regulation of NOD1 expression have a major impact on inflammation and gastric cancer?R21AI138258 · NIAID · INSTITUTE FOR SYSTEMS BIOLOGY · PI SUBRAMANIAN, NAEHA · 2018 to 2019
$523k
NIAID NIH HHS R01 AI163131NIAID NIH HHS R21 AI138258
6 · The paper itself

Abstract

The ability to identify the role of a particular gene within a system is dependent on control of the expression of that gene. In this protocol, we describe a method for stable, conditional expression of Nod-Like receptors (NLRs) in THP-1 cells using a lentiviral expression system. This system combines all the necessary components for tetracycline-inducible gene expression in a single lentivector with constitutive co-expression of a selection marker, which is an efficient means for controlling gene expression using a single viral infection of cells. This is done in a third generation lentiviral expression platform that improves the safety of lentiviruses and allows for greater gene expression than previous lentiviral platforms. The lentiviral expression plasmid is first engineered to contain the gene of interest driven by a TRE (tetracycline response element) promoter in a simple gateway cloning step and is then co-transfected into HEK293T cells, along with packaging and envelope plasmids to generate the virus. The virus is used to infect a cell type of interest at a low MOI so that the majority of the transduced cells contain a single viral integration. Infected cells are grown under selection, and viral integration is validated by qPCR. Gene expression in stably transduced cells is induced with doxycycline and validated by qPCR, immunoblot, and flow cytometry. This flexible lentiviral expression platform may be used for stable and robust induction of a gene of interest in a range of cells for multiple applications. Graphic abstract: Schematic overview of lentiviral transduction of THP-1 cells.

Indexed as

LentivirusNLRNOD1Stable expressionTetracyclineTRE

Identifiers

PMID34859120
PMCPMC8595424
OpenAlexW3208198783

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.