Evidence map›Paper›PMID 34893872›Full record

ArticleNucleic acids research2022

High throughput single-cell genome sequencing gives insights into the generation and evolution of mosaic aneuploidy in Leishmania donovani.

Gabriel H Negreira, Pieter Monsieurs, Hideo Imamura, Ilse Maes, Nada Kuk, Akila Yagoubat, Frederik Van den Broeck, Yvon Sterkers, Jean-Claude Dujardin, Malgorzata A Domagalska

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
9.2field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 57 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Gabriel H NegreiraMolecular Parasitology Unit, Institute of Tropical Medicine, Antwerp, Belgium.ORCID 0000-0003-4867-8892
Pieter MonsieursMolecular Parasitology Unit, Institute of Tropical Medicine, Antwerp, Belgium.
Hideo ImamuraMolecular Parasitology Unit, Institute of Tropical Medicine, Antwerp, Belgium.
Ilse MaesMolecular Parasitology Unit, Institute of Tropical Medicine, Antwerp, Belgium.
Nada KukMiVEGEC, University of Montpellier, CNRS, IRD, Montpellier, France.
Akila YagoubatMiVEGEC, University of Montpellier, CNRS, IRD, Montpellier, France.
Frederik Van den BroeckMolecular Parasitology Unit, Institute of Tropical Medicine, Antwerp, Belgium.
Yvon SterkersMiVEGEC, University of Montpellier, CNRS, IRD, Montpellier, France.
Jean-Claude DujardinMolecular Parasitology Unit, Institute of Tropical Medicine, Antwerp, Belgium.
Malgorzata A DomagalskaMolecular Parasitology Unit, Institute of Tropical Medicine, Antwerp, Belgium.
Instituut voor Tropische Geneeskunde · BECentre National de la Recherche Scientifique · FRRega Institute for Medical Research · BEUniversity of Antwerp · BE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Leishmania, a unicellular eukaryotic parasite, is a unique model for aneuploidy and cellular heterogeneity, along with their potential role in adaptation to environmental stresses. Somy variation within clonal populations was previously explored in a small subset of chromosomes using fluorescence hybridization methods. This phenomenon, termed mosaic aneuploidy (MA), might have important evolutionary and functional implications but remains under-explored due to technological limitations. Here, we applied and validated a high throughput single-cell genome sequencing method to study for the first time the extent and dynamics of whole karyotype heterogeneity in two clonal populations of Leishmania promastigotes representing different stages of MA evolution in vitro. We found that drastic changes in karyotypes quickly emerge in a population stemming from an almost euploid founder cell. This possibly involves polyploidization/hybridization at an early stage of population expansion, followed by assorted ploidy reduction. During further stages of expansion, MA increases by moderate and gradual karyotypic alterations, affecting a defined subset of chromosomes. Our data provide the first complete characterization of MA in Leishmania and pave the way for further functional studies.

Indexed as

AneuploidyEvolution, MolecularMosaicismGenome, ProtozoanLeishmania donovaniSingle-Cell AnalysisWhole Genome Sequencing

Identifiers

PMID34893872
PMCPMC8886908
OpenAlexW4221052783

What Socratic holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.