Evidence map›Paper›PMID 34903607›Full record

ArticleCancer research2022

Leveraging Allele-Specific Expression for Therapeutic Response Gene Discovery in Glioblastoma.

Arko Sen, Briana C Prager, Cuiqing Zhong, Donglim Park, Zhe Zhu, Ryan C Gimple, Qiulian Wu, Jean A Bernatchez, Sungjun Beck, Alex E Clark and 3 more

Open access · hybridAbstract read
In one paragraph

Article in Cancer research, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.5field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 1 country.

Arko Sen *Integrative Biology Laboratory, Salk Institute for Biological Studies, La Jolla, California.
Briana C Prager *Division of Regenerative Medicine, Department of Medicine, University of California, San Diego, San Diego, California.
Cuiqing ZhongUPMC Hillman Cancer Center, Pittsburgh, Pennsylvania; Department of Neurology, University of Pittsburgh, Pittsburgh, Pennsylvania.
Donglim ParkDivision of Regenerative Medicine, Department of Medicine, University of California, San Diego, San Diego, California.
Zhe ZhuDivision of Regenerative Medicine, Department of Medicine, University of California, San Diego, San Diego, California.ORCID 0000-0002-5385-948X
Ryan C GimpleDivision of Regenerative Medicine, Department of Medicine, University of California, San Diego, San Diego, California.ORCID 0000-0002-7189-3243
Qiulian WuDivision of Regenerative Medicine, Department of Medicine, University of California, San Diego, San Diego, California.
Jean A BernatchezSkaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, La Jolla, California.ORCID 0000-0002-8309-1627
Sungjun BeckCenter for Discovery and Innovation in Parasitic Diseases, University of California, San Diego, La Jolla, California.
Alex E ClarkSkaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, La Jolla, California.
Jair L Siqueira-NetoSkaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, La Jolla, California.
Jeremy N RichDivision of Regenerative Medicine, Department of Medicine, University of California, San Diego, San Diego, California. gmcvicker@salk.edu richjn@upmc.edu.ORCID 0000-0001-7845-5302
Graham McVickerIntegrative Biology Laboratory, Salk Institute for Biological Studies, La Jolla, California. gmcvicker@salk.edu richjn@upmc.edu.ORCID 0000-0003-0991-0951
University of California San Diego · USSalk Institute for Biological Studies · USColumbia University Irving Medical Center · USUPMC Hillman Cancer Center · US

Funding

Viral Vector Core (VVC)P30CA014195 · NCI · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI Alan Saghatelian · 1985 to 2026
$82.8M
MEDICAL SCIENTIST TRAINING PROGRAMT32GM007250 · NIGMS · CASE WESTERN RESERVE UNIVERSITY · PI HUANG, ALEX YEE-CHEN · 1985 to 2023
$33.4M
Dynamic Complexity of Brain Tumor Stem Cells (R35CA197718)R35CA197718 · NCI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI RICH, JEREMY N · 2015 to 2021
$6.4M
Using genomic perturbations to understand trait-associated human genetic variationR35HG011315 · NHGRI · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI MCVICKER, GRAHAM · 2021 to 2025
$2.9M
Targeting the Circadian Rhythm in Glioblastoma Stem Cells (R01CA238662)R01CA238662 · NCI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI KAY, STEVE A, RICH, JEREMY N · 2020 to 2024
$2.8M
Dual Targeting of Brain Tumor Initiating Cells through Inhibition of BMI1 and EZH2 (R01NS103434)R01NS103434 · NINDS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI RICH, JEREMY N · 2017 to 2021
$1.7M
The Unfolded Protein Response in GlioblastomaF30CA217066 · NCI · CLEVELAND CLINIC LERNER COM-CWRU · PI PRAGER, BRIANA · 2017 to 2020
$195k
Epigenetic Regulation of Lipid Metabolism in Glioma Stem CellsF30CA217065 · NCI · CLEVELAND CLINIC LERNER COM-CWRU · PI GIMPLE, RYAN CHRISTOPHER · 2017 to 2020
$189k
NCI NIH HHS F30 CA217065NCI NIH HHS F30 CA217066NCI NIH HHS P30 CA014195NCI NIH HHS R01 CA238662NCI NIH HHS R35 CA197718NHGRI NIH HHS R35 HG011315NIGMS NIH HHS T32 GM007250NINDS NIH HHS R01 NS103434
6 · The paper itself

Abstract

Glioblastoma is the most prevalent primary malignant brain tumor in adults and is characterized by poor prognosis and universal tumor recurrence. Effective glioblastoma treatments are lacking, in part due to somatic mutations and epigenetic reprogramming that alter gene expression and confer drug resistance. To investigate recurrently dysregulated genes in glioblastoma, we interrogated allele-specific expression (ASE), the difference in expression between two alleles of a gene, in glioblastoma stem cells (GSC) derived from 43 patients. A total of 118 genes were found with recurrent ASE preferentially in GSCs compared with normal tissues. These genes were enriched for apoptotic regulators, including schlafen family member 11 (

Indexed as

AllelesCell Line, TumorGenetic Association StudiesGlioblastomaHumans

Identifiers

PMID34903607
PMCPMC9122831
OpenAlexW4225533174

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.